UHGV-0190082

Genome information

Genome length 44,015 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190082
vOTU ID	vOTU-004328
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598816
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.45
Jumbo phage	No

Genome content
Genome length	44,015 bps
GC content	46.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	92.58%
Average CDS length	532.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190082_2	PHROG	phrog_30034	NA	unknown function
UHGV-0190082_2	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0190082_2	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0190082_2	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0190082_3	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-0190082_3	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-0190082_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0190082_4	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0190082_4	Structural annotation	PF06810	NA	NA
UHGV-0190082_5	PHROG	phrog_544	major head protein	head and packaging
UHGV-0190082_5	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0190082_5	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0190082_5	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0190082_7	PHROG	phrog_17977	NA	unknown function
UHGV-0190082_7	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0190082_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0190082_8	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0190082_8	Structural annotation	PF11367	NA	NA
UHGV-0190082_9	PHROG	phrog_885	major tail protein	tail
UHGV-0190082_9	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0190082_9	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0190082_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0190082_12	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0190082_12	eggNOG-mapper	1121334.KB911068_gene2299	Phage tail tape measure protein, TP901 family	NA
UHGV-0190082_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0190082_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0190082_13	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0190082_13	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0190082_13	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0190082_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0190082_14	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0190082_14	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0190082_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0190082_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0190082_15	PHROG	phrog_9534	head protein	head and packaging
UHGV-0190082_15	UniRef90	UniRef90_Q73EE6	Phage structural protein, truncation	NA
UHGV-0190082_15	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0190082_17	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0190082_17	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0190082_17	UniRef90	UniRef90_A0A0W7TLV7	Peptidase_M23 domain-containing protein	NA
UHGV-0190082_17	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0190082_17	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0190082_17	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0190082_17	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0190082_19	eggNOG-mapper	1122921.KB898212_gene2740	NA	NA
UHGV-0190082_20	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0190082_20	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0190082_24	PHROG	phrog_16123	NA	unknown function
UHGV-0190082_24	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0190082_25	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0190082_26	PHROG	phrog_3754	NA	unknown function
UHGV-0190082_26	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0190082_27	PHROG	phrog_21718	NA	unknown function
UHGV-0190082_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0190082_28	PHROG	phrog_22984	NA	unknown function
UHGV-0190082_29	PHROG	phrog_16490	NA	unknown function
UHGV-0190082_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0190082_31	PHROG	phrog_20016	NA	unknown function
UHGV-0190082_31	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0190082_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0190082_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190082_32	Structural annotation	PF12510	NA	NA
UHGV-0190082_33	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0190082_34	KOfam	K14059	int; integrase	NA
UHGV-0190082_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0190082_34	UniRef90	UniRef90_A0A3R6ZHT3	Site-specific integrase	NA
UHGV-0190082_34	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0190082_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190082_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190082_34	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0190082_35	eggNOG-mapper	1105029.HMPREF1137_1911	NA	NA
UHGV-0190082_35	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0190082_36	UniRef90	UniRef90_A0A1Q6SAI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0190082_36	eggNOG-mapper	556261.HMPREF0240_03592	Putative restriction endonuclease	NA
UHGV-0190082_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190082_36	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0190082_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190082_37	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-0190082_37	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0190082_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190082_37	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0190082_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190082_42	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0190082_42	UniRef90	UniRef90_A0A1B1YM73	Transcriptional regulator	NA
UHGV-0190082_42	eggNOG-mapper	1121335.Clst_1876	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190082_42	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0190082_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190082_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190082_42	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0190082_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190082_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190082_43	UniRef90	UniRef90_A0A133YTS1	Bro-N domain-containing protein	NA
UHGV-0190082_43	eggNOG-mapper	411471.SUBVAR_04667	BRO family, N-terminal domain	NA
UHGV-0190082_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190082_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190082_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0190082_46	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0190082_46	UniRef90	UniRef90_A0A6G7Y206	Phage recombination protein Bet	NA
UHGV-0190082_46	eggNOG-mapper	1122173.AXVL01000067_gene1959	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0190082_46	Pfam	PF03837	RecT family	RecT
UHGV-0190082_46	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0190082_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0190082_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0190082_47	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0190082_47	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0190082_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0190082_47	Structural annotation	PF05565	NA	NA
UHGV-0190082_48	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0190082_48	UniRef90	UniRef90_UPI001CB75A00	chromosomal replication initiator DnaA	NA
UHGV-0190082_48	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0190082_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0190082_48	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0190082_51	Structural annotation	PF04319, PF08962	NA	NA
UHGV-0190082_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0190082_52	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0190082_52	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0190082_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190082_52	Structural annotation	PF04445, MF_00341, TIGR00537, COG0270	NA	NA
UHGV-0190082_54	PHROG	phrog_9300	NA	unknown function
UHGV-0190082_54	UniRef90	UniRef90_F2F2I1	Predicted ATPase	NA
UHGV-0190082_55	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0190082_56	PHROG	phrog_7314	NA	unknown function
UHGV-0190082_65	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190082_65	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190082_65	UniRef90	UniRef90_R7EVC4	Single-stranded DNA-binding protein	NA
UHGV-0190082_65	eggNOG-mapper	203119.Cthe_1350	Single-strand binding protein family	NA
UHGV-0190082_65	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190082_65	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190082_65	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190082_65	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190082_65	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0190082_66	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190082_66	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0190082_66	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0190082_66	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0190082_67	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0190082_67	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0190082_67	UniRef90	UniRef90_A0A1C5ZCG7	ParB/RepB/Spo0J family partition protein	NA
UHGV-0190082_67	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0190082_67	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0190082_67	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0190082_67	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190082_67	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0190082_68	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0190082_68	eggNOG-mapper	1399942.U3PFV4_9CAUD	NA	NA
UHGV-0190082_68	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0190082_69	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0190082_69	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0190082_69	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0190082_69	Structural annotation	PF20691	NA	NA
UHGV-0190082_71	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190082_71	PHROG	phrog_10250	NA	unknown function
UHGV-0190082_71	UniRef90	UniRef90_A0A1I3QR69	Phage terminase, large subunit, PBSX family	NA
UHGV-0190082_71	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0190082_71	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190082_71	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0190082_71	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190082_71	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0190082_72	PHROG	phrog_64	portal protein	head and packaging
UHGV-0190082_72	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0190082_72	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0190082_72	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190082_72	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0190082_73	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0190082_73	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0190082_73	UniRef90	UniRef90_A0A3D3Y165	Phage_Mu_F domain-containing protein	NA
UHGV-0190082_73	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0190082_73	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0190082_73	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0190082_73	COG	COG2369	NA	NA
UHGV-0190082_73	Structural annotation	PF03496, PF04233, MF_04142, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0190082_75	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0190082_75	UniRef90	UniRef90_A0A6A8M6L6	HK97 gp10 family phage protein	NA
UHGV-0190082_75	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0190082_75	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0190082_75	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0190082_75	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0190082_76	Structural annotation	PF10651	NA	NA