UHGV-0190086

Genome information

Genome length 45,936 bps

CDS count 76

Completeness 100.00% (complete)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190086
vOTU ID	vOTU-047108
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598811
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.23
Jumbo phage	No

Genome content
Genome length	45,936 bps
GC content	54.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.68%
Average CDS length	551.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190086_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190086_1	PHROG	phrog_25370	NA	unknown function
UHGV-0190086_1	UniRef90	UniRef90_A0A353NN87	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-0190086_1	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0190086_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190086_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190086_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190086_1	Structural annotation	PF00436, MF_00984, NF005242, COG2965	NA	NA
UHGV-0190086_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0190086_2	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0190086_3	PHROG	phrog_7566	NA	unknown function
UHGV-0190086_3	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0190086_3	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0190086_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190086_4	UniRef90	UniRef90_UPI0004B3FA8C	AP2 domain-containing protein	NA
UHGV-0190086_4	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0190086_4	Structural annotation	PF17375	NA	NA
UHGV-0190086_5	PHROG	phrog_1389	NA	unknown function
UHGV-0190086_5	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0190086_5	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0190086_6	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190086_6	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0190086_6	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0190086_6	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0190086_7	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0190086_7	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0190086_7	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0190086_7	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0190086_7	Structural annotation	PF05565	NA	NA
UHGV-0190086_12	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0190086_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190086_14	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0190086_14	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0190086_14	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0190086_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190086_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190086_14	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190086_15	PHROG	phrog_5079	NA	unknown function
UHGV-0190086_16	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0190086_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190086_16	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0190086_17	UniRef90	UniRef90_A0A1V0QCF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0190086_17	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0190086_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190086_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190086_17	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0190086_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190086_18	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190086_19	KOfam	K14059	int; integrase	NA
UHGV-0190086_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0190086_19	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0190086_19	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0190086_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190086_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0190086_19	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0190086_20	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0190086_20	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0190086_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190086_22	PHROG	phrog_16490	NA	unknown function
UHGV-0190086_22	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0190086_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0190086_25	PHROG	phrog_435	endolysin	lysis
UHGV-0190086_25	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190086_25	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0190086_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0190086_25	Pfam	PF05036	SPOR domain	SPOR
UHGV-0190086_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190086_25	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0190086_26	PHROG	phrog_199	holin	lysis
UHGV-0190086_26	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0190086_26	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0190086_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0190086_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0190086_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0190086_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0190086_29	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0190086_29	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0190086_29	NCBIFam	NF041551.1	YlcI/YnfO family protein	NA
UHGV-0190086_29	COG	COG4877	NA	NA
UHGV-0190086_29	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0190086_32	Structural annotation	PF10651, TIGR04339	NA	NA
UHGV-0190086_33	PHROG	phrog_372	tail protein	tail
UHGV-0190086_33	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0190086_33	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0190086_33	Pfam	PF05895	NA	DUF859
UHGV-0190086_33	COG	COG4675	Phage tail collar domain	NA
UHGV-0190086_33	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0190086_34	PHROG	phrog_6616	tail protein	tail
UHGV-0190086_34	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0190086_34	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0190086_34	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0190086_35	PHROG	phrog_1194	NA	unknown function
UHGV-0190086_35	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0190086_35	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0190086_35	Pfam	PF20458	NA	DUF6711
UHGV-0190086_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0190086_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190086_36	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0190086_36	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0190086_36	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0190086_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0190086_37	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0190086_38	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0190086_38	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0190086_38	Pfam	PF16478	NA	DUF5055
UHGV-0190086_38	Structural annotation	PF16478	NA	NA
UHGV-0190086_39	PHROG	phrog_158	major tail protein	tail
UHGV-0190086_39	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0190086_39	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0190086_39	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0190086_39	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0190086_40	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0190086_41	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0190086_42	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0190086_43	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0190086_43	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0190086_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0190086_43	Structural annotation	TIGR01560	NA	NA
UHGV-0190086_44	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0190086_44	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0190086_44	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0190086_44	Pfam	PF17236	NA	DUF5309
UHGV-0190086_44	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0190086_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0190086_46	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0190086_46	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0190086_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190086_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0190086_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0190086_47	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0190086_47	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0190086_47	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0190086_47	COG	COG5410	NA	NA
UHGV-0190086_47	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0190086_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190086_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190086_48	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0190086_48	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0190086_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190086_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190086_48	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0190086_50	UniRef90	UniRef90_A0A0A8WED4	Ribbon-helix-helix protein, copG family	NA
UHGV-0190086_50	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0190086_50	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0190086_51	eggNOG-mapper	693746.OBV_27580	Copper amine oxidase N-terminal domain	NA
UHGV-0190086_51	Structural annotation	PF19190, MF_00791, NF003967, COG2967	NA	NA
UHGV-0190086_52	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0190086_52	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0190086_52	UniRef90	UniRef90_R7EUM7	Putative site-specific recombinase	NA
UHGV-0190086_52	eggNOG-mapper	693746.OBV_34630	Resolvase, N terminal domain	NA
UHGV-0190086_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0190086_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0190086_52	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0190086_55	PHROG	phrog_6244	NA	unknown function
UHGV-0190086_55	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0190086_56	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0190086_57	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0190086_57	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0190086_59	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0190086_59	Structural annotation	TIGR01636	NA	NA
UHGV-0190086_64	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0190086_64	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0190086_64	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0190086_64	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0190086_64	Structural annotation	PF14354, TIGR03655, COG4888	NA	NA
UHGV-0190086_68	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0190086_68	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-0190086_68	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0190086_68	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0190086_68	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0190086_69	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0190086_69	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0190086_69	UniRef90	UniRef90_A0A810Q3U8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0190086_69	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0190086_69	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0190086_69	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0190086_69	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190086_69	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0190086_70	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0190086_70	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0190086_70	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0190086_70	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0190086_70	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0190086_70	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0190086_70	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0190086_71	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0190086_71	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0190086_71	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0190086_71	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0190086_71	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0190086_71	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0190086_71	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0190086_71	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0190086_71	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0190086_73	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0190086_73	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190086_73	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0190086_73	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0190086_73	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0190086_73	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0190086_73	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0190086_74	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0190086_74	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0190086_74	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0190086_74	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0190086_74	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0190086_74	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0190086_74	COG	COG0305	Replicative DNA helicase	NA
UHGV-0190086_74	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0190086_75	PHROG	phrog_15768	NA	unknown function
UHGV-0190086_75	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0190086_75	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0190086_76	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190086_76	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190086_76	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0190086_76	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0190086_76	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190086_76	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190086_76	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190086_76	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA