UHGV-0190110

Genome information

Genome length 27,604 bps

CDS count 42

Completeness 62.29% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190110
vOTU ID	vOTU-029881
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737772_a1_ct143736_vs1@Podoviridae__sp._ct8pb1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.81
Jumbo phage	No

Genome content
Genome length	27,604 bps
GC content	46.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	86.28%
Average CDS length	570.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190110_1	PHROG	phrog_12160	NA	unknown function
UHGV-0190110_1	UniRef90	UniRef90_A0A844JT17	Restriction endonuclease subunit S	NA
UHGV-0190110_1	eggNOG-mapper	1317122.ATO12_03525	Type I restriction modification DNA specificity domain	NA
UHGV-0190110_1	PADLOC	Specificity_II_00004	Type II specificity subunit	RM
UHGV-0190110_1	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0190110_1	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-0190110_2	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0190110_2	PHROG	phrog_13671	DNA methyltransferase	other
UHGV-0190110_2	UniRef90	UniRef90_UPI00195DBB23	N-6 DNA methylase	NA
UHGV-0190110_2	eggNOG-mapper	469610.HMPREF0189_01987	Type II restriction modification enzyme methyltransferase	NA
UHGV-0190110_2	PADLOC	REase_MTase_IIG_00021	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0190110_2	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0190110_2	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0190110_3	PHROG	phrog_13671	DNA methyltransferase	other
UHGV-0190110_3	UniRef90	UniRef90_A0A1V0QE76	Type II restriction endonuclease subunit M	NA
UHGV-0190110_3	eggNOG-mapper	469610.HMPREF0189_01987	Type II restriction modification enzyme methyltransferase	NA
UHGV-0190110_3	PADLOC	REase_MTase_IIG_00021	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0190110_3	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0190110_4	KOfam	K14059	int; integrase	NA
UHGV-0190110_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0190110_4	UniRef90	UniRef90_A0A1C7HGT4	Core-binding (CB) domain-containing protein	NA
UHGV-0190110_4	eggNOG-mapper	469610.HMPREF0189_01989	Belongs to the 'phage' integrase family	NA
UHGV-0190110_4	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0190110_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190110_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190110_4	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0190110_5	KOfam	K14059	int; integrase	NA
UHGV-0190110_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0190110_5	UniRef90	UniRef90_UPI0012BC6D7A	site-specific integrase	NA
UHGV-0190110_5	eggNOG-mapper	469610.HMPREF0189_01846	Belongs to the 'phage' integrase family	NA
UHGV-0190110_5	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0190110_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190110_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190110_5	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0190110_6	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0190110_6	UniRef90	UniRef90_UPI0012BBDD1D	helix-turn-helix domain-containing protein	NA
UHGV-0190110_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0190110_6	Structural annotation	PF12728, NF033499, COG3311	NA	NA
UHGV-0190110_7	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0190110_9	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190110_9	UniRef90	UniRef90_D9Y6K6	BRO family, N-terminal domain protein	NA
UHGV-0190110_9	eggNOG-mapper	469610.HMPREF0189_01161	BRO family, N-terminal domain	NA
UHGV-0190110_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190110_9	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0190110_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0190110_10	UniRef90	UniRef90_A0A8B2DAP6	YHYH domain-containing protein	NA
UHGV-0190110_10	eggNOG-mapper	582402.Hbal_1886	Excalibur calcium-binding domain	NA
UHGV-0190110_10	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0190110_10	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0190110_11	UniRef90	UniRef90_A0A5B3FNV2	KTSC domain-containing protein	NA
UHGV-0190110_11	Structural annotation	PF13619	NA	NA
UHGV-0190110_12	PHROG	phrog_2164	NA	unknown function
UHGV-0190110_12	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-0190110_13	eggNOG-mapper	469610.HMPREF0189_01154	NA	NA
UHGV-0190110_14	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-0190110_15	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-0190110_20	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0190110_20	UniRef90	UniRef90_B6CXH7	Gp157	NA
UHGV-0190110_20	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0190110_20	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0190110_20	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0190110_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190110_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190110_21	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-0190110_21	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0190110_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190110_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190110_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190110_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190110_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0190110_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0190110_22	UniRef90	UniRef90_A0A6J5P0M3	Essential recombination function protein	NA
UHGV-0190110_22	eggNOG-mapper	1207076.ALAT01000105_gene1941	ERF superfamily	NA
UHGV-0190110_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-0190110_22	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0190110_25	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-0190110_27	PHROG	phrog_5018	NA	unknown function
UHGV-0190110_27	UniRef90	UniRef90_UPI0012BB7DC3	group I intron-associated PD-(D/E)XK endonuclease	NA
UHGV-0190110_27	Pfam	PF11645	PD-(D/E)XK endonuclease	PDDEXK_5
UHGV-0190110_28	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0190110_28	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0190110_28	UniRef90	UniRef90_UPI001563F13C	S24 family peptidase	NA
UHGV-0190110_28	eggNOG-mapper	469610.HMPREF0189_01170	Peptidase S24-like	NA
UHGV-0190110_28	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0190110_28	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0190110_28	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0190110_29	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190110_29	UniRef90	UniRef90_UPI001C3EDC4A	helix-turn-helix domain-containing protein	NA
UHGV-0190110_29	eggNOG-mapper	557598.LHK_01505	NA	NA
UHGV-0190110_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0190110_32	eggNOG-mapper	762966.HMPREF9439_01020	NA	NA
UHGV-0190110_33	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190110_33	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0190110_34	Structural annotation	PF04218	NA	NA
UHGV-0190110_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190110_35	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0190110_35	UniRef90	UniRef90_UPI0012BCC981	terminase small subunit	NA
UHGV-0190110_35	eggNOG-mapper	1095747.HMPREF1049_1836	Terminase small subunit	NA
UHGV-0190110_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190110_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0190110_35	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0190110_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190110_36	PHROG	phrog_5902	NA	unknown function
UHGV-0190110_36	UniRef90	UniRef90_UPI0012BCF9F6	terminase	NA
UHGV-0190110_36	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0190110_36	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0190110_36	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0190110_37	UniRef90	UniRef90_UPI0012BC2332	GNAT family N-acetyltransferase	NA
UHGV-0190110_37	eggNOG-mapper	1072685.IX83_07115	Acetyltransferase (GNAT) family	NA
UHGV-0190110_37	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0190110_37	COG	COG3375	Predicted acetyltransferase, GNAT superfamily	NA
UHGV-0190110_38	Pfam	PF05680	ATP synthase E chain	ATP-synt_E
UHGV-0190110_39	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0190110_39	UniRef90	UniRef90_UPI0012BC467D	portal protein	NA
UHGV-0190110_39	eggNOG-mapper	194699.PORTL_BPBPP	Bacteriophage head to tail connecting protein	NA
UHGV-0190110_39	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0190110_39	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0190110_40	PHROG	phrog_528	NA	unknown function
UHGV-0190110_41	PHROG	phrog_458	protease	other
UHGV-0190110_41	UniRef90	UniRef90_UPI0013EFD20D	protease	NA
UHGV-0190110_41	eggNOG-mapper	557598.LHK_01541	NA	NA
UHGV-0190110_42	PHROG	phrog_212	major head protein	head and packaging
UHGV-0190110_42	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-0190110_42	eggNOG-mapper	194699.Q775C7_BPBPP	viral capsid	NA
UHGV-0190110_42	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0190110_42	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA