UHGV-0190162

Genome information

vOTU vOTU-019983

Genome length 34,809 bps

CDS count 44

Completeness 88.00% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190162
vOTU ID	vOTU-019983
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737713_b1_ct26_vs3@Siphoviridae__sp._ctxIq26@linear
BioSample	SAMEA2737713
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.88
Jumbo phage	No

Genome content
Genome length	34,809 bps
GC content	43.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.03%
Average CDS length	738.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190162_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190162_5	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0190162_5	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0190162_5	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0190162_6	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0190162_6	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0190162_6	UniRef90	UniRef90_A0A173WRS0	Ribonuclease H	NA
UHGV-0190162_6	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0190162_6	Pfam	PF00075	RNase H	RNase_H
UHGV-0190162_6	COG	COG0328	Ribonuclease HI	NA
UHGV-0190162_6	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0190162_7	PHROG	phrog_15077	NA	unknown function
UHGV-0190162_7	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0190162_7	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0190162_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190162_7	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0190162_10	PHROG	phrog_7566	NA	unknown function
UHGV-0190162_10	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0190162_11	Pfam	PF09186	NA	DUF1949
UHGV-0190162_12	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0190162_12	eggNOG-mapper	665956.HMPREF1032_03082	NA	NA
UHGV-0190162_14	PHROG	phrog_8684	NA	unknown function
UHGV-0190162_14	UniRef90	UniRef90_UPI000463D743	YopX family protein	NA
UHGV-0190162_14	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0190162_14	Pfam	PF09643	YopX protein	YopX
UHGV-0190162_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0190162_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0190162_16	PHROG	phrog_19011	NA	unknown function
UHGV-0190162_16	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0190162_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190162_17	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0190162_17	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0190162_17	Structural annotation	PF02996	NA	NA
UHGV-0190162_18	UniRef90	UniRef90_UPI000BE35E0A	bacteriophage abortive infection AbiH family protein	NA
UHGV-0190162_18	eggNOG-mapper	1122217.KB899580_gene1655	Bacteriophage abortive infection AbiH	NA
UHGV-0190162_18	PADLOC	AbiH	AbiH	Abi
UHGV-0190162_18	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0190162_18	Structural annotation	PF14253	NA	NA
UHGV-0190162_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190162_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0190162_19	UniRef90	UniRef90_R5QUM6	Terminase small subunit	NA
UHGV-0190162_19	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0190162_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190162_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0190162_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0190162_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190162_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0190162_20	UniRef90	UniRef90_UPI001D06E172	terminase	NA
UHGV-0190162_20	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0190162_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190162_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0190162_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0190162_21	UniRef90	UniRef90_R5RCE0	Phage minor capsid protein	NA
UHGV-0190162_21	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0190162_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0190162_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0190162_22	UniRef90	UniRef90_R5F6J4	PBECR2 domain-containing protein	NA
UHGV-0190162_22	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0190162_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0190162_22	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0190162_22	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0190162_22	Structural annotation	PF06152	NA	NA
UHGV-0190162_24	PHROG	phrog_1048	NA	unknown function
UHGV-0190162_24	UniRef90	UniRef90_UPI00156DCDC3	NA	NA
UHGV-0190162_24	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0190162_24	Pfam	PF11195	NA	DUF2829
UHGV-0190162_24	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0190162_24	Structural annotation	PF11195	NA	NA
UHGV-0190162_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0190162_25	eggNOG-mapper	33035.JPJF01000093_gene2253	NA	NA
UHGV-0190162_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-0190162_26	UniRef90	UniRef90_R5RH87	Putative phage major capsid protein	NA
UHGV-0190162_26	eggNOG-mapper	33035.JPJF01000093_gene2252	NA	NA
UHGV-0190162_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0190162_27	PHROG	phrog_1378	NA	unknown function
UHGV-0190162_27	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0190162_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0190162_28	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0190162_29	PHROG	phrog_8710	NA	unknown function
UHGV-0190162_29	eggNOG-mapper	483218.BACPEC_01152	NA	NA
UHGV-0190162_29	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0190162_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0190162_30	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0190162_31	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0190162_31	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0190162_31	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0190162_31	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0190162_31	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0190162_32	PHROG	phrog_820	major tail protein	tail
UHGV-0190162_32	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0190162_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0190162_33	PHROG	phrog_8300	NA	unknown function
UHGV-0190162_33	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0190162_33	Structural annotation	PF06854	NA	NA
UHGV-0190162_34	PHROG	phrog_8355	NA	unknown function
UHGV-0190162_34	UniRef90	UniRef90_A0A2Y9BGF3	Bacteriophage Gp15 protein	NA
UHGV-0190162_34	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0190162_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0190162_34	Structural annotation	PF06854	NA	NA
UHGV-0190162_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190162_36	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0190162_36	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0190162_36	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0190162_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0190162_37	PHROG	phrog_1194	NA	unknown function
UHGV-0190162_37	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0190162_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0190162_38	PHROG	phrog_6616	tail protein	tail
UHGV-0190162_38	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0190162_38	eggNOG-mapper	357276.EL88_12830	Phage minor structural protein	NA
UHGV-0190162_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0190162_38	COG	COG4926	Phage-related protein	NA
UHGV-0190162_38	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0190162_39	PHROG	phrog_11105	NA	unknown function
UHGV-0190162_40	PHROG	phrog_16164	NA	unknown function
UHGV-0190162_40	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0190162_40	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0190162_41	PHROG	phrog_18593	NA	unknown function
UHGV-0190162_41	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0190162_42	PHROG	phrog_199	holin	lysis
UHGV-0190162_42	UniRef90	UniRef90_A0A6N2RND4	Holin family protein	NA
UHGV-0190162_42	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0190162_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0190162_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0190162_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0190162_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0190162_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0190162_43	PHROG	phrog_14030	NA	unknown function
UHGV-0190162_43	UniRef90	UniRef90_A0A412ERJ4	NlpC/P60 domain-containing protein (Fragment)	NA
UHGV-0190162_43	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0190162_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190162_43	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0190162_43	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0190162_43	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0190162_43	Structural annotation	PF01183, PF05382, NF003627, TIGR02219, COG3757	NA	NA
UHGV-0190162_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190162_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190162_44	UniRef90	UniRef90_A0A2Z4UD85	Bro-N domain-containing protein	NA
UHGV-0190162_44	eggNOG-mapper	658655.HMPREF0988_00912	Phage antirepressor protein KilAC domain	NA
UHGV-0190162_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190162_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190162_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0190162_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3617	NA	NA