UHGV-0190194

Genome information

Genome length 34,125 bps

CDS count 60

Completeness 81.35% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190194
vOTU ID	vOTU-029891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596591
BioSample	SAMN09781770
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.06
Jumbo phage	No

Genome content
Genome length	34,125 bps
GC content	50.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.69%
Average CDS length	518.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190194_1	UniRef90	UniRef90_UPI001A9B9B76	pentapeptide repeat-containing protein	NA
UHGV-0190194_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0190194_1	Structural annotation	PF00805	NA	NA
UHGV-0190194_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190194_7	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0190194_7	eggNOG-mapper	1033744.CAEL01000029_gene1288	NA	NA
UHGV-0190194_7	Pfam	PF07374	NA	DUF1492
UHGV-0190194_7	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0190194_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0190194_8	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0190194_8	UniRef90	UniRef90_UPI00190E9E57	NA	NA
UHGV-0190194_8	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0190194_8	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0190194_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0190194_8	Pfam	PF14386	NA	DUF4417
UHGV-0190194_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190194_8	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0190194_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190194_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0190194_12	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0190194_12	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0190194_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0190194_12	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0190194_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0190194_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190194_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0190194_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0190194_13	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0190194_13	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0190194_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190194_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0190194_14	PHROG	phrog_1233	NA	unknown function
UHGV-0190194_14	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0190194_14	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0190194_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0190194_15	UniRef90	UniRef90_A0A417HAG8	Minor capsid protein	NA
UHGV-0190194_15	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0190194_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0190194_15	COG	COG2369	NA	NA
UHGV-0190194_15	Structural annotation	PF06152	NA	NA
UHGV-0190194_17	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0190194_17	UniRef90	UniRef90_X8K268	DNA-binding helix-turn-helix protein	NA
UHGV-0190194_17	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0190194_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190194_17	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0190194_17	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0190194_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0190194_19	UniRef90	UniRef90_A0A4D6A3V9	Capsid and scaffold protein	NA
UHGV-0190194_19	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0190194_19	AcrCatalog	cluster_74817	NA	NA
UHGV-0190194_19	Structural annotation	PF14265	NA	NA
UHGV-0190194_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0190194_20	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0190194_20	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0190194_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0190194_20	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0190194_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0190194_21	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0190194_22	PHROG	phrog_3366	NA	unknown function
UHGV-0190194_22	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0190194_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0190194_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0190194_23	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0190194_23	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0190194_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0190194_23	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0190194_24	PHROG	phrog_3266	tail completion	connector
UHGV-0190194_24	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0190194_24	Structural annotation	PF12691	NA	NA
UHGV-0190194_25	PHROG	phrog_3099	NA	unknown function
UHGV-0190194_25	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0190194_25	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0190194_26	PHROG	phrog_11299	NA	unknown function
UHGV-0190194_26	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0190194_26	Structural annotation	PF10666	NA	NA
UHGV-0190194_27	PHROG	phrog_706	NA	unknown function
UHGV-0190194_27	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0190194_27	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0190194_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0190194_27	Structural annotation	PF06854	NA	NA
UHGV-0190194_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190194_28	eggNOG-mapper	1262449.CP6013_1049	tail tape measure protein	NA
UHGV-0190194_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0190194_28	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0190194_29	PHROG	phrog_1194	NA	unknown function
UHGV-0190194_29	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0190194_29	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0190194_30	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0190194_30	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0190194_30	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0190194_31	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0190194_31	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0190194_32	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0190194_32	Structural annotation	PF07238	NA	NA
UHGV-0190194_35	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0190194_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0190194_38	PHROG	phrog_291	endolysin	lysis
UHGV-0190194_38	UniRef90	UniRef90_A0A315Y1X6	Glycosyl hydrolase family 25	NA
UHGV-0190194_38	eggNOG-mapper	1193128.A200_03694	lysozyme activity	NA
UHGV-0190194_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190194_38	COG	COG1388	LysM repeat	NA
UHGV-0190194_38	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0190194_39	UniRef90	UniRef90_A0A3A9IW95	Branched-chain amino acid ABC transporter permease	NA
UHGV-0190194_39	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0190194_40	PHROG	phrog_881	holin	lysis
UHGV-0190194_40	UniRef90	UniRef90_A0A843HKU1	Phage holin	NA
UHGV-0190194_40	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0190194_40	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0190194_40	Structural annotation	PF16938	NA	NA
UHGV-0190194_43	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0190194_45	PHROG	phrog_16490	NA	unknown function
UHGV-0190194_45	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0190194_46	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0190194_47	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0190194_47	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0190194_48	KOfam	K14059	int; integrase	NA
UHGV-0190194_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0190194_48	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0190194_48	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0190194_48	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0190194_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190194_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190194_48	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0190194_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0190194_49	eggNOG-mapper	1382304.JNIL01000001_gene3508	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190194_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190194_49	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0190194_49	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190194_50	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-0190194_51	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0190194_51	PHROG	phrog_19856	NA	unknown function
UHGV-0190194_51	eggNOG-mapper	1280663.ATVR01000001_gene572	Restriction endonuclease	NA
UHGV-0190194_51	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0190194_51	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0190194_51	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0190194_53	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0190194_53	eggNOG-mapper	755731.Clo1100_1415	DNA-binding helix-turn-helix protein	NA
UHGV-0190194_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190194_54	Structural annotation	PF20763, MF_00273, NF001981	NA	NA
UHGV-0190194_58	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0190194_58	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0190194_58	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0190194_60	PHROG	phrog_4433	NA	unknown function
UHGV-0190194_60	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0190194_60	COG	COG5164	Transcription elongation factor SPT5	NA