UHGV-0190199

Genome information

Genome length 31,023 bps

CDS count 55

Completeness 84.57% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190199
vOTU ID	vOTU-029892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596595
BioSample	SAMN09781770
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.4
Jumbo phage	No

Genome content
Genome length	31,023 bps
GC content	58.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.23%
Average CDS length	522.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190199_1	PHROG	phrog_1066	NA	unknown function
UHGV-0190199_1	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0190199_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0190199_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190199_2	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0190199_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0190199_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190199_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190199_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190199_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0190199_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190199_3	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0190199_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0190199_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190199_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190199_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0190199_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0190199_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0190199_4	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0190199_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0190199_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0190199_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0190199_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0190199_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190199_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0190199_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0190199_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190199_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190199_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190199_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190199_6	PHROG	phrog_5223	neck protein	connector
UHGV-0190199_6	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0190199_6	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0190199_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0190199_7	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0190199_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0190199_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0190199_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0190199_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0190199_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190199_8	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0190199_8	Structural annotation	PF05657	NA	NA
UHGV-0190199_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0190199_9	Structural annotation	TIGR01725	NA	NA
UHGV-0190199_10	PHROG	phrog_88	major tail protein	tail
UHGV-0190199_10	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-0190199_10	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0190199_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0190199_10	COG	COG5492	NA	NA
UHGV-0190199_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0190199_11	Structural annotation	PF11836	NA	NA
UHGV-0190199_13	PHROG	phrog_33680	NA	unknown function
UHGV-0190199_13	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0190199_13	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0190199_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0190199_13	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0190199_14	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0190199_14	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0190199_14	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0190199_14	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0190199_15	PHROG	phrog_26795	NA	unknown function
UHGV-0190199_15	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0190199_15	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0190199_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0190199_16	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0190199_17	Structural annotation	PF10651	NA	NA
UHGV-0190199_19	PHROG	phrog_10898	NA	unknown function
UHGV-0190199_19	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0190199_19	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0190199_19	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0190199_19	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0190199_20	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0190199_21	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0190199_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0190199_24	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0190199_24	Structural annotation	PF14600	NA	NA
UHGV-0190199_27	PHROG	phrog_6918	holin	lysis
UHGV-0190199_27	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0190199_27	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0190199_27	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0190199_27	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0190199_28	PHROG	phrog_14030	NA	unknown function
UHGV-0190199_28	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0190199_28	eggNOG-mapper	689781.AUJX01000056_gene2046	NA	NA
UHGV-0190199_30	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0190199_30	PHROG	phrog_9764	NA	unknown function
UHGV-0190199_30	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0190199_30	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0190199_30	PADLOC	AbiQ	AbiQ	Abi
UHGV-0190199_30	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0190199_30	Structural annotation	PF13958	NA	NA
UHGV-0190199_33	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0190199_33	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0190199_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0190199_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0190199_34	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-0190199_34	eggNOG-mapper	1408437.JNJN01000002_gene1420	Resolvase, N terminal domain	NA
UHGV-0190199_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0190199_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-0190199_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0190199_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0190199_34	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0190199_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0190199_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190199_35	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0190199_35	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0190199_36	UniRef90	UniRef90_UPI001CB7843A	TM2 domain-containing protein	NA
UHGV-0190199_36	eggNOG-mapper	471855.Shel_12440	TM2 domain	NA
UHGV-0190199_36	COG	COG2314	NA	NA
UHGV-0190199_36	Structural annotation	PF05962, MF_01591, COG3758	NA	NA
UHGV-0190199_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190199_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190199_38	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0190199_38	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0190199_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190199_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190199_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190199_44	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-0190199_44	Structural annotation	PF12286	NA	NA
UHGV-0190199_45	Structural annotation	PF10548	NA	NA
UHGV-0190199_47	Structural annotation	NF041247	NA	NA
UHGV-0190199_48	Structural annotation	PF05082	NA	NA
UHGV-0190199_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0190199_52	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0190199_52	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0190199_52	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0190199_52	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0190199_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0190199_52	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0190199_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190199_52	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0190199_54	UniRef90	UniRef90_A0A845MZZ9	NA	NA
UHGV-0190199_54	Pfam	PF04448	NA	DUF551
UHGV-0190199_54	Structural annotation	NF041588	NA	NA
UHGV-0190199_55	PHROG	phrog_3136	NA	unknown function
UHGV-0190199_55	Pfam	PF04266	ASCH domain	ASCH
UHGV-0190199_55	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA