UHGV-0190200

Genome information

Genome length 31,448 bps

CDS count 54

Completeness 74.65% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190200
vOTU ID	vOTU-029649
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596594
BioSample	SAMN09781770
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.91
Jumbo phage	No

Genome content
Genome length	31,448 bps
GC content	54.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.79%
Average CDS length	520.17 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190200_1	PHROG	phrog_4433	NA	unknown function
UHGV-0190200_1	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0190200_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0190200_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0190200_4	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0190200_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190200_5	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0190200_5	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0190200_5	eggNOG-mapper	1216932.CM240_0604	Phage antirepressor protein	NA
UHGV-0190200_5	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0190200_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190200_5	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0190200_5	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0190200_6	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0190200_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0190200_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190200_7	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0190200_7	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0190200_7	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0190200_8	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0190200_10	PHROG	phrog_888	NA	unknown function
UHGV-0190200_10	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0190200_10	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0190200_10	Pfam	PF14471	NA	DUF4428
UHGV-0190200_10	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0190200_10	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0190200_13	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0190200_14	KOfam	K14059	int; integrase	NA
UHGV-0190200_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0190200_14	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0190200_14	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0190200_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190200_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0190200_14	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0190200_16	Structural annotation	PF12510	NA	NA
UHGV-0190200_17	PHROG	phrog_20016	NA	unknown function
UHGV-0190200_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0190200_17	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0190200_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190200_18	PHROG	phrog_16490	NA	unknown function
UHGV-0190200_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0190200_19	PHROG	phrog_22984	NA	unknown function
UHGV-0190200_20	PHROG	phrog_21718	NA	unknown function
UHGV-0190200_20	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0190200_21	PHROG	phrog_3754	NA	unknown function
UHGV-0190200_21	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0190200_24	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0190200_24	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0190200_24	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0190200_25	PHROG	phrog_5765	NA	unknown function
UHGV-0190200_25	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0190200_25	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0190200_25	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0190200_27	PHROG	phrog_15303	NA	unknown function
UHGV-0190200_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0190200_29	PHROG	phrog_291	endolysin	lysis
UHGV-0190200_29	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0190200_29	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0190200_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190200_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0190200_29	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0190200_30	PHROG	phrog_1382	NA	unknown function
UHGV-0190200_30	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0190200_32	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0190200_32	Structural annotation	MF_04106	NA	NA
UHGV-0190200_33	UniRef90	UniRef90_A0A1M6MWV9	Phage tail protein	NA
UHGV-0190200_33	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0190200_33	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0190200_36	PHROG	phrog_3558	tail protein	tail
UHGV-0190200_36	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0190200_36	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0190200_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0190200_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0190200_36	COG	COG4926	Phage-related protein	NA
UHGV-0190200_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0190200_37	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0190200_37	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0190200_37	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0190200_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0190200_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0190200_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0190200_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0190200_40	PHROG	phrog_885	major tail protein	tail
UHGV-0190200_40	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0190200_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0190200_41	Structural annotation	PF13554	NA	NA
UHGV-0190200_42	PHROG	phrog_17977	NA	unknown function
UHGV-0190200_42	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0190200_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190200_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0190200_44	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0190200_44	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0190200_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0190200_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0190200_47	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0190200_47	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0190200_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0190200_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0190200_49	PHROG	phrog_8680	NA	unknown function
UHGV-0190200_49	UniRef90	UniRef90_A0A6N7TNE8	NA	NA
UHGV-0190200_49	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0190200_49	Pfam	PF14386	NA	DUF4417
UHGV-0190200_49	Structural annotation	PF14386	NA	NA
UHGV-0190200_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0190200_51	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0190200_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0190200_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0190200_51	COG	COG2369	NA	NA
UHGV-0190200_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0190200_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-0190200_53	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0190200_53	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0190200_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190200_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0190200_54	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0190200_54	eggNOG-mapper	1121105.ATXL01000006_gene1371	Terminase-like family	NA
UHGV-0190200_54	COG	COG1783	Phage terminase large subunit	NA