UHGV-0190299

Genome information

Genome length 24,254 bps

CDS count 34

Completeness 75.39% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190299
vOTU ID	vOTU-029902
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594556
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.45
Jumbo phage	No

Genome content
Genome length	24,254 bps
GC content	51.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	92.76%
Average CDS length	664.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190299_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0190299_1	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-0190299_1	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0190299_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0190299_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0190299_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0190299_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190299_2	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-0190299_2	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0190299_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190299_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190299_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190299_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0190299_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190299_3	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-0190299_3	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0190299_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190299_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0190299_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190299_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0190299_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0190299_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0190299_4	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-0190299_4	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0190299_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0190299_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0190299_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0190299_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190299_5	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-0190299_5	eggNOG-mapper	1391647.AVSV01000039_gene1100	Phage major capsid protein, HK97 family	NA
UHGV-0190299_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190299_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190299_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190299_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190299_6	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0190299_6	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-0190299_6	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-0190299_6	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0190299_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0190299_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0190299_7	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-0190299_7	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0190299_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0190299_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0190299_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190299_8	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0190299_8	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0190299_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0190299_8	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0190299_9	PHROG	phrog_78	tail terminator	connector
UHGV-0190299_9	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0190299_9	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0190299_10	PHROG	phrog_88	major tail protein	tail
UHGV-0190299_10	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-0190299_10	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0190299_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0190299_10	COG	COG5492	NA	NA
UHGV-0190299_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0190299_11	PHROG	phrog_13494	NA	unknown function
UHGV-0190299_11	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-0190299_12	PHROG	phrog_25901	NA	unknown function
UHGV-0190299_12	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0190299_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0190299_13	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-0190299_13	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0190299_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0190299_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0190299_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0190299_14	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0190299_14	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0190299_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0190299_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0190299_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0190299_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0190299_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0190299_15	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-0190299_15	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0190299_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0190299_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0190299_15	COG	COG4926	Phage-related protein	NA
UHGV-0190299_16	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-0190299_16	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-0190299_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0190299_16	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0190299_17	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0190299_18	PHROG	phrog_4105	NA	unknown function
UHGV-0190299_18	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0190299_19	PHROG	phrog_263	holin	lysis
UHGV-0190299_19	UniRef90	UniRef90_R6JQI4	Holin SPP1 family	NA
UHGV-0190299_19	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0190299_19	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0190299_19	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0190299_19	Structural annotation	PF04688	NA	NA
UHGV-0190299_20	UniRef90	UniRef90_R6J3S0	Peptidase_C39_2 domain-containing protein	NA
UHGV-0190299_20	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0190299_20	Structural annotation	PF11814, NF033920, COG4990	NA	NA
UHGV-0190299_22	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0190299_22	eggNOG-mapper	1280668.ATVT01000007_gene1190	sequence-specific DNA binding	NA
UHGV-0190299_22	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0190299_23	Structural annotation	PF19923, NF009981, COG0355	NA	NA
UHGV-0190299_26	UniRef90	UniRef90_A0A316R7E8	RHH_1 domain-containing protein	NA
UHGV-0190299_26	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0190299_26	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0190299_29	KOfam	K14059	int; integrase	NA
UHGV-0190299_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0190299_29	UniRef90	UniRef90_A0A316RE68	Tyr recombinase domain-containing protein	NA
UHGV-0190299_29	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0190299_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190299_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190299_29	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0190299_30	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0190299_30	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0190299_30	UniRef90	UniRef90_A0A316R7F3	Exonuclease domain-containing protein	NA
UHGV-0190299_30	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0190299_30	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0190299_30	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0190299_30	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0190299_30	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0190299_31	PHROG	phrog_16443	NA	unknown function
UHGV-0190299_31	eggNOG-mapper	1118057.CAGX01000058_gene115	NA	NA
UHGV-0190299_32	PHROG	phrog_87	metallo-protease	other
UHGV-0190299_32	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-0190299_32	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0190299_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0190299_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0190299_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0190299_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190299_33	UniRef90	UniRef90_A0A1Q6LC39	HTH cro/C1-type domain-containing protein	NA
UHGV-0190299_33	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0190299_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190299_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190299_33	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0190299_34	UniRef90	UniRef90_A0A316R8G0	HTH cro/C1-type domain-containing protein	NA
UHGV-0190299_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190299_34	Structural annotation	PF13560, NF041951, COG1396	NA	NA