UHGV-0190430

Genome information

Genome length 34,901 bps

CDS count 52

Completeness 95.90% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190430
vOTU ID	vOTU-074501
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593903
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.31
Jumbo phage	No

Genome content
Genome length	34,901 bps
GC content	61.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.36%
Average CDS length	630.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190430_1	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0190430_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0190430_1	UniRef90	UniRef90_G4L1H9	Methyltransferase	NA
UHGV-0190430_1	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0190430_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0190430_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0190430_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0190430_1	COG	COG0863	DNA modification methylase	NA
UHGV-0190430_1	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0190430_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0190430_2	UniRef90	UniRef90_G4L1I0	Putative terminase small subunit	NA
UHGV-0190430_2	eggNOG-mapper	693746.OBV_19990	Phage terminase, small subunit	NA
UHGV-0190430_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0190430_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0190430_3	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0190430_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190430_4	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0190430_4	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0190430_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190430_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190430_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190430_4	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0190430_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190430_5	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0190430_5	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-0190430_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190430_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0190430_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190430_5	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0190430_6	KOfam	K06904	NA	NA
UHGV-0190430_6	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0190430_6	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-0190430_6	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0190430_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0190430_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0190430_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0190430_6	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0190430_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190430_7	UniRef90	UniRef90_A0A1H4BNJ7	Phage major capsid protein, HK97 family	NA
UHGV-0190430_7	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0190430_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190430_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190430_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190430_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0190430_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0190430_9	UniRef90	UniRef90_U2R2J1	Putative phage head-tail adaptor	NA
UHGV-0190430_9	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0190430_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0190430_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0190430_10	UniRef90	UniRef90_UPI00037F8D31	HK97 gp10 family phage protein	NA
UHGV-0190430_10	eggNOG-mapper	1123298.KB904077_gene463	NA	NA
UHGV-0190430_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0190430_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0190430_11	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0190430_11	Structural annotation	PF20765	NA	NA
UHGV-0190430_12	PHROG	phrog_88	major tail protein	tail
UHGV-0190430_12	UniRef90	UniRef90_D1PND6	Phage major tail protein, phi13 family	NA
UHGV-0190430_12	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0190430_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0190430_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0190430_13	PHROG	phrog_709	NA	unknown function
UHGV-0190430_13	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0190430_13	Structural annotation	PF11836	NA	NA
UHGV-0190430_14	PHROG	phrog_3033	NA	unknown function
UHGV-0190430_14	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0190430_15	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0190430_15	UniRef90	UniRef90_UPI000C7A2D83	phage tail tape measure protein	NA
UHGV-0190430_15	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0190430_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0190430_15	Structural annotation	COG5280	NA	NA
UHGV-0190430_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0190430_16	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0190430_16	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0190430_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0190430_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0190430_17	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0190430_17	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0190430_17	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0190430_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0190430_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0190430_17	COG	COG4926	Phage-related protein	NA
UHGV-0190430_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0190430_18	Structural annotation	PF17642	NA	NA
UHGV-0190430_19	PHROG	phrog_19280	NA	unknown function
UHGV-0190430_19	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0190430_19	Structural annotation	PF10651, PF04862, TIGR04362, COG5513	NA	NA
UHGV-0190430_20	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0190430_21	PHROG	phrog_30034	NA	unknown function
UHGV-0190430_21	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0190430_21	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0190430_21	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0190430_21	Structural annotation	PF14600	NA	NA
UHGV-0190430_23	eggNOG-mapper	1203606.HMPREF1526_00254	NA	NA
UHGV-0190430_24	Structural annotation	PF09682	NA	NA
UHGV-0190430_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0190430_25	PHROG	phrog_1794	amidase	lysis
UHGV-0190430_25	UniRef90	UniRef90_A0A658JW32	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190430_25	eggNOG-mapper	397288.C806_04859	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0190430_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0190430_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0190430_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190430_25	Structural annotation	PF01510, PF01471, TIGR03979, COG5632, COG3409	NA	NA
UHGV-0190430_26	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0190430_26	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0190430_28	PHROG	phrog_22984	NA	unknown function
UHGV-0190430_29	PHROG	phrog_16490	NA	unknown function
UHGV-0190430_29	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0190430_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190430_32	KOfam	K14059	int; integrase	NA
UHGV-0190430_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0190430_32	UniRef90	UniRef90_A0A174HFN7	Site-specific tyrosine recombinase XerC	NA
UHGV-0190430_32	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0190430_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190430_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190430_32	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0190430_33	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0190430_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190430_33	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0190430_34	PHROG	phrog_17982	NA	unknown function
UHGV-0190430_34	eggNOG-mapper	720554.Clocl_1541	NA	NA
UHGV-0190430_34	Pfam	PF14020	NA	DUF4236
UHGV-0190430_34	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0190430_35	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0190430_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190430_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190430_35	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0190430_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190430_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190430_36	UniRef90	UniRef90_A0A352DNS0	XRE family transcriptional regulator	NA
UHGV-0190430_36	eggNOG-mapper	1266909.AUAG01000023_gene23	sequence-specific DNA binding	NA
UHGV-0190430_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190430_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190430_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190430_37	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0190430_37	UniRef90	UniRef90_A0A1Y3RCD0	DNA-binding protein	NA
UHGV-0190430_37	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190430_37	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0190430_37	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0190430_37	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0190430_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0190430_38	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0190430_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190430_39	UniRef90	UniRef90_UPI00195D2180	helix-turn-helix domain-containing protein	NA
UHGV-0190430_39	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0190430_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0190430_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0190430_39	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0190430_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0190430_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0190430_40	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0190430_40	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0190430_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0190430_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0190430_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0190430_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0190430_41	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0190430_41	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0190430_41	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0190430_41	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0190430_41	Pfam	PF13614	AAA domain	AAA_31
UHGV-0190430_41	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0190430_41	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0190430_43	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0190430_43	PHROG	phrog_27290	NA	unknown function
UHGV-0190430_43	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0190430_43	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0190430_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0190430_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190430_43	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0190430_50	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190430_50	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0190430_50	Structural annotation	PF11726	NA	NA
UHGV-0190430_51	UniRef90	UniRef90_UPI000E48105C	conjugal transfer protein	NA
UHGV-0190430_51	eggNOG-mapper	1123288.SOV_2c02400	Cysteine-rich KTR	NA
UHGV-0190430_51	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0190430_51	Structural annotation	PF14205	NA	NA
UHGV-0190430_52	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190430_52	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0190430_52	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0190430_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190430_52	Structural annotation	TIGR02646	NA	NA