UHGV-0190480

Genome information

Genome length 58,725 bps

CDS count 68

Completeness 99.18% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190480
vOTU ID	vOTU-011214
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594805
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.73
Jumbo phage	No

Genome content
Genome length	58,725 bps
GC content	43.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	87.55%
Average CDS length	759.31 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190480_11	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0190480_11	UniRef90	UniRef90_A0A7X9AE53	HD domain-containing protein	NA
UHGV-0190480_11	eggNOG-mapper	203123.OEOE_0904	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0190480_11	Pfam	PF01966	HD domain	HD
UHGV-0190480_11	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0190480_11	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0190480_11	Structural annotation	PF13742, PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0190480_12	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0190480_12	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0190480_12	UniRef90	UniRef90_A0A7X7H672	DNA polymerase I	NA
UHGV-0190480_12	eggNOG-mapper	1121930.AQXG01000001_gene1415	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0190480_12	PADLOC	drt-cluster58	DRT	DRT
UHGV-0190480_12	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0190480_12	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0190480_12	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0190480_12	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0190480_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190480_13	UniRef90	UniRef90_A0A3B8SUV1	Endonuclease	NA
UHGV-0190480_13	eggNOG-mapper	1572704.A0A0D3MVE4_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0190480_13	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0190480_15	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0190480_15	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0190480_15	UniRef90	UniRef90_A0A534LD92	CMP/dCMP-type deaminase domain-containing protein	NA
UHGV-0190480_15	eggNOG-mapper	313598.MED152_08975	MafB19-like deaminase	NA
UHGV-0190480_15	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0190480_15	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0190480_15	Structural annotation	PF00383, MF_00972, TIGR02571, COG2131	NA	NA
UHGV-0190480_18	KOfam	K15518	dgk; deoxyguanosine kinase [EC:2.7.1.113]	NA
UHGV-0190480_18	PHROG	phrog_761	thymidylate kinase	other
UHGV-0190480_18	UniRef90	UniRef90_A0A7X7BY76	AAA family ATPase	NA
UHGV-0190480_18	Pfam	PF02223	Thymidylate kinase	Thymidylate_kin
UHGV-0190480_18	Structural annotation	PF03976, MF_00165, TIGR00041, COG1428	NA	NA
UHGV-0190480_19	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0190480_19	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0190480_19	UniRef90	UniRef90_A0A2N5Q030	Thymidylate synthase (FAD)	NA
UHGV-0190480_19	eggNOG-mapper	33035.JPJF01000081_gene249	Thymidylate synthase complementing protein	NA
UHGV-0190480_19	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0190480_19	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0190480_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0190480_21	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0190480_21	UniRef90	UniRef90_B7GIM0	Phage-encoded dCTP pyrophosphatase	NA
UHGV-0190480_21	eggNOG-mapper	491915.Aflv_0655	dUTPase	NA
UHGV-0190480_21	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0190480_21	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0190480_22	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190480_22	UniRef90	UniRef90_A0A7X7BYB4	YqaJ domain-containing protein	NA
UHGV-0190480_22	eggNOG-mapper	1449063.JMLS01000013_gene6132	YqaJ-like viral recombinase domain	NA
UHGV-0190480_22	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0190480_22	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0190480_22	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0190480_22	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0190480_24	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0190480_24	PHROG	phrog_18685	NA	unknown function
UHGV-0190480_24	UniRef90	UniRef90_A0A661MUG1	ZnF_CHCC domain-containing protein	NA
UHGV-0190480_24	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0190480_24	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0190480_24	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0190480_24	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0190480_24	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0190480_24	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0190480_25	PHROG	phrog_2402	NA	unknown function
UHGV-0190480_25	eggNOG-mapper	462590.A9J4Z6_BPPYU	NA	NA
UHGV-0190480_25	Structural annotation	PF18897	NA	NA
UHGV-0190480_26	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0190480_26	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0190480_26	UniRef90	UniRef90_A0A7X8XIX5	RNase H type-1 domain-containing protein	NA
UHGV-0190480_26	eggNOG-mapper	1121451.DESAM_20563	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0190480_26	Pfam	PF00075	RNase H	RNase_H
UHGV-0190480_26	COG	COG0328	Ribonuclease HI	NA
UHGV-0190480_26	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0190480_27	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0190480_27	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0190480_27	UniRef90	UniRef90_A0A3D0Y9V5	ATP-dependent DNA ligase	NA
UHGV-0190480_27	eggNOG-mapper	1280.SAXN108_2170	ATP dependent DNA ligase domain	NA
UHGV-0190480_27	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0190480_27	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0190480_27	COG	COG1793	ATP-dependent DNA ligase	NA
UHGV-0190480_27	Structural annotation	PF01068, PF17879, MF_00407, NF002868, COG1793	NA	NA
UHGV-0190480_28	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0190480_28	UniRef90	UniRef90_A0A4R6AG29	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0190480_28	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0190480_28	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0190480_28	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0190480_28	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0190480_29	UniRef90	UniRef90_A0A7X7BYB6	VRR-NUC domain-containing protein	NA
UHGV-0190480_30	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0190480_30	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0190480_30	UniRef90	UniRef90_A0A7X7BY88	DEAD/DEAH box helicase	NA
UHGV-0190480_30	eggNOG-mapper	1280676.AUJO01000007_gene2148	SNF2 family N-terminal domain	NA
UHGV-0190480_30	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0190480_30	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0190480_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0190480_30	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0190480_30	Structural annotation	PF04851, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0190480_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0190480_32	PHROG	phrog_291	endolysin	lysis
UHGV-0190480_32	UniRef90	UniRef90_C4F8J2	Glycosyl hydrolase family 25	NA
UHGV-0190480_32	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0190480_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190480_32	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0190480_32	Pfam	PF01476	LysM domain	LysM
UHGV-0190480_32	COG	COG1388	LysM repeat	NA
UHGV-0190480_32	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0190480_33	Structural annotation	PF07761	NA	NA
UHGV-0190480_35	PHROG	phrog_15074	NA	unknown function
UHGV-0190480_35	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0190480_35	COG	COG4926	Phage-related protein	NA
UHGV-0190480_37	PHROG	phrog_1194	NA	unknown function
UHGV-0190480_37	eggNOG-mapper	1294142.CINTURNW_1039	NA	NA
UHGV-0190480_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0190480_38	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0190480_38	eggNOG-mapper	1123288.SOV_6c00240	tape measure	NA
UHGV-0190480_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0190480_38	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0190480_39	PHROG	phrog_2115	tail protein	tail
UHGV-0190480_39	eggNOG-mapper	1382315.JPOI01000001_gene275	NA	NA
UHGV-0190480_39	Structural annotation	PF11836	NA	NA
UHGV-0190480_40	PHROG	phrog_88	major tail protein	tail
UHGV-0190480_40	UniRef90	UniRef90_A0A7V7B018	Phage tail protein	NA
UHGV-0190480_40	eggNOG-mapper	649747.HMPREF0083_01004	Phage major tail protein phi13	NA
UHGV-0190480_40	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0190480_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0190480_40	COG	COG5492	NA	NA
UHGV-0190480_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0190480_41	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0190480_41	Structural annotation	PF12691	NA	NA
UHGV-0190480_43	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0190480_44	PHROG	phrog_1732	NA	unknown function
UHGV-0190480_46	PHROG	phrog_1005	major head protein	head and packaging
UHGV-0190480_46	UniRef90	UniRef90_A0A316D4V5	Major capsid protein E	NA
UHGV-0190480_46	eggNOG-mapper	1121121.KB894295_gene4458	NA	NA
UHGV-0190480_46	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0190480_47	PHROG	phrog_673	head scaffolding protein	head and packaging
UHGV-0190480_47	Pfam	PF09956	NA	DUF2190
UHGV-0190480_47	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0190480_49	PHROG	phrog_1530	DNA methyltransferase	other
UHGV-0190480_49	UniRef90	UniRef90_A0A7X8AV76	Peptidase_S78_2 domain-containing protein	NA
UHGV-0190480_49	eggNOG-mapper	1235793.C809_02227	Putative phage serine protease XkdF	NA
UHGV-0190480_49	Pfam	PF14550	Putative phage serine protease XkdF	Peptidase_S78_2
UHGV-0190480_50	PHROG	phrog_113	portal protein	head and packaging
UHGV-0190480_50	UniRef90	UniRef90_A0A1C5RGK5	Mu-like prophage protein gp29	NA
UHGV-0190480_50	eggNOG-mapper	1235793.C809_02225	Mu-like prophage protein gp29	NA
UHGV-0190480_50	COG	COG4383	NA	NA
UHGV-0190480_50	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0190480_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190480_51	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0190480_51	UniRef90	UniRef90_A0A7X7BY57	Terminase_6C domain-containing protein	NA
UHGV-0190480_51	eggNOG-mapper	173824.Q9HH54_9CAUD	Terminase-like family	NA
UHGV-0190480_51	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190480_51	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0190480_51	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0190480_51	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0190480_52	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0190480_52	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0190480_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0190480_53	PHROG	phrog_443	holin	lysis
UHGV-0190480_53	UniRef90	UniRef90_A0A6L7IPY0	Holin	NA
UHGV-0190480_53	eggNOG-mapper	1437608.BBIA_0612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0190480_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0190480_56	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190480_57	PHROG	phrog_16490	NA	unknown function
UHGV-0190480_57	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0190480_59	PHROG	phrog_21718	NA	unknown function
UHGV-0190480_59	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0190480_61	PHROG	phrog_2214	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190480_61	UniRef90	UniRef90_A0A7W1YBI2	HNH endonuclease	NA
UHGV-0190480_61	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0190480_61	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190480_62	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0190480_62	eggNOG-mapper	68570.DC74_2977	NA	NA