UHGV-0190672

Genome information

Genome length 20,299 bps

CDS count 37

Completeness 54.26% (medium-quality)

geNomad score 0.9539

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190672
vOTU ID	vOTU-029930
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737695_a1_ct2930_vs1@Siphoviridae__sp._ct9pm1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9539
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.61
Jumbo phage	No

Genome content
Genome length	20,299 bps
GC content	59.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.47%
Average CDS length	522.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190672_1	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0190672_1	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190672_1	UniRef90	UniRef90_UPI0011DD3E1F	type I restriction endonuclease	NA
UHGV-0190672_1	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0190672_1	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0190672_1	COG	COG4748	NA	NA
UHGV-0190672_1	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0190672_2	PHROG	phrog_87	metallo-protease	other
UHGV-0190672_2	UniRef90	UniRef90_UPI00189AFBD9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0190672_2	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0190672_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0190672_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0190672_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0190672_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0190672_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190672_3	UniRef90	UniRef90_UPI00195603C9	helix-turn-helix domain-containing protein	NA
UHGV-0190672_3	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0190672_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190672_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0190672_3	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0190672_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0190672_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190672_4	UniRef90	UniRef90_A0A2K9P4T7	Helix-turn-helix domain protein	NA
UHGV-0190672_4	eggNOG-mapper	1117108.PAALTS15_22128	SpoVT / AbrB like domain	NA
UHGV-0190672_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190672_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190672_10	UniRef90	UniRef90_A0A316Q5K4	TraY domain-containing protein	NA
UHGV-0190672_10	eggNOG-mapper	1378168.N510_00491	NA	NA
UHGV-0190672_10	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0190672_12	PHROG	phrog_22134	NA	unknown function
UHGV-0190672_12	UniRef90	UniRef90_A0A3C0WYV2	Helix-turn-helix domain-containing protein (Fragment)	NA
UHGV-0190672_12	eggNOG-mapper	665950.HMPREF1025_01423	NA	NA
UHGV-0190672_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0190672_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0190672_13	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0190672_13	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0190672_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0190672_13	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0190672_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0190672_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0190672_14	UniRef90	UniRef90_A0A3A8Z521	DNA helicase	NA
UHGV-0190672_14	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0190672_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0190672_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0190672_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0190672_14	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0190672_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0190672_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0190672_15	UniRef90	UniRef90_A0A1Y4CFT6	AAA_31 domain-containing protein	NA
UHGV-0190672_15	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0190672_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0190672_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0190672_15	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0190672_16	PHROG	phrog_15609	NA	unknown function
UHGV-0190672_16	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-0190672_16	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0190672_16	Pfam	PF11300	NA	DUF3102
UHGV-0190672_16	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0190672_16	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0190672_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190672_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190672_17	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-0190672_17	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0190672_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190672_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190672_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190672_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190672_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0190672_18	PHROG	phrog_10714	NA	unknown function
UHGV-0190672_18	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0190672_18	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0190672_19	PHROG	phrog_25732	NA	unknown function
UHGV-0190672_21	PHROG	phrog_31029	NA	unknown function
UHGV-0190672_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190672_25	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0190672_25	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0190672_26	UniRef90	UniRef90_UPI001F309B22	cysteine-rich KTR domain-containing protein	NA
UHGV-0190672_26	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0190672_26	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0190672_26	Structural annotation	PF14205, COG4416	NA	NA
UHGV-0190672_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190672_27	UniRef90	UniRef90_A0A1Y4RJ73	HNH endonuclease	NA
UHGV-0190672_27	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0190672_27	AcrCatalog	cluster_19695	NA	NA
UHGV-0190672_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0190672_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190672_27	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0190672_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0190672_29	PHROG	phrog_12862	NA	unknown function
UHGV-0190672_29	UniRef90	UniRef90_A0A1Y3RDZ9	Methyltransferase	NA
UHGV-0190672_29	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0190672_29	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0190672_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0190672_29	COG	COG0863	DNA modification methylase	NA
UHGV-0190672_29	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0190672_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0190672_30	UniRef90	UniRef90_UPI0013EF3F2C	phage terminase small subunit P27 family	NA
UHGV-0190672_30	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0190672_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0190672_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0190672_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0190672_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0190672_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190672_31	UniRef90	UniRef90_UPI001031973F	terminase large subunit	NA
UHGV-0190672_31	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0190672_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190672_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190672_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190672_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0190672_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190672_33	UniRef90	UniRef90_A0A1Y4RNE3	Phage portal protein	NA
UHGV-0190672_33	eggNOG-mapper	742738.HMPREF9460_00874	Phage portal protein	NA
UHGV-0190672_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190672_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0190672_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190672_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0190672_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0190672_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0190672_34	UniRef90	UniRef90_A0A096CPA9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0190672_34	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-0190672_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0190672_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0190672_34	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0190672_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190672_35	UniRef90	UniRef90_UPI00195AAE7C	phage major capsid protein	NA
UHGV-0190672_35	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0190672_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190672_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190672_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190672_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190672_36	eggNOG-mapper	742738.HMPREF9460_00877	NA	NA
UHGV-0190672_36	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0190672_37	UniRef90	UniRef90_UPI0010309381	head-tail connector protein	NA
UHGV-0190672_37	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0190672_37	Structural annotation	PF05135, TIGR01560	NA	NA