UHGV-0190677

Genome information

Genome length 37,627 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190677
vOTU ID	vOTU-047129
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595281
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.13
Jumbo phage	No

Genome content
Genome length	37,627 bps
GC content	50.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.65%
Average CDS length	574.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190677_2	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-0190677_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190677_4	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0190677_4	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0190677_4	Structural annotation	PF04545	NA	NA
UHGV-0190677_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190677_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0190677_5	UniRef90	UniRef90_D4M103	Phage terminase, small subunit	NA
UHGV-0190677_5	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0190677_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190677_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0190677_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0190677_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190677_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0190677_6	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-0190677_6	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0190677_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190677_6	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0190677_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0190677_7	UniRef90	UniRef90_A0A174WUZ7	Phage minor capsid protein	NA
UHGV-0190677_7	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0190677_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0190677_8	PHROG	phrog_25639	NA	unknown function
UHGV-0190677_8	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0190677_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0190677_9	UniRef90	UniRef90_UPI001B3C8EB1	minor capsid protein	NA
UHGV-0190677_9	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0190677_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0190677_9	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0190677_9	Structural annotation	PF06152	NA	NA
UHGV-0190677_11	PHROG	phrog_918	NA	unknown function
UHGV-0190677_11	UniRef90	UniRef90_UPI0018A88BA9	NA	NA
UHGV-0190677_11	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0190677_11	Pfam	PF19791	NA	DUF6275
UHGV-0190677_11	Structural annotation	PF19791	NA	NA
UHGV-0190677_12	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0190677_12	UniRef90	UniRef90_A0A3R6TX12	NA	NA
UHGV-0190677_12	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0190677_12	Pfam	PF14359	NA	DUF4406
UHGV-0190677_12	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0190677_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0190677_13	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0190677_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0190677_14	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-0190677_14	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0190677_14	Structural annotation	MF_04119	NA	NA
UHGV-0190677_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0190677_15	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0190677_16	PHROG	phrog_8710	NA	unknown function
UHGV-0190677_16	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0190677_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0190677_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0190677_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0190677_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0190677_18	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0190677_18	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0190677_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0190677_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0190677_19	PHROG	phrog_820	major tail protein	tail
UHGV-0190677_19	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0190677_19	Structural annotation	PF06199, TIGR02241, COG5437	NA	NA
UHGV-0190677_20	PHROG	phrog_8300	NA	unknown function
UHGV-0190677_20	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0190677_20	Structural annotation	PF06854	NA	NA
UHGV-0190677_21	PHROG	phrog_8355	NA	unknown function
UHGV-0190677_21	UniRef90	UniRef90_UPI001D093271	bacteriophage Gp15 family protein	NA
UHGV-0190677_21	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0190677_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190677_22	UniRef90	UniRef90_A0A1C5VM72	Phage-related protein	NA
UHGV-0190677_22	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0190677_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0190677_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0190677_23	PHROG	phrog_1194	NA	unknown function
UHGV-0190677_23	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0190677_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0190677_24	PHROG	phrog_13879	NA	unknown function
UHGV-0190677_24	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0190677_24	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0190677_25	PHROG	phrog_18725	NA	unknown function
UHGV-0190677_25	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0190677_25	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0190677_26	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0190677_26	UniRef90	UniRef90_A0A0M2NHB1	Neck appendage protein	NA
UHGV-0190677_26	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-0190677_26	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0190677_27	PHROG	phrog_30556	NA	unknown function
UHGV-0190677_27	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0190677_28	PHROG	phrog_38707	NA	unknown function
UHGV-0190677_28	UniRef90	UniRef90_A0A6J7X095	Bacteriophage lambda, Stf, side tail fibre-repeat-2	NA
UHGV-0190677_28	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0190677_28	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0190677_28	COG	COG4675	Phage tail collar domain	NA
UHGV-0190677_29	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0190677_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0190677_30	PHROG	phrog_9428	NA	unknown function
UHGV-0190677_30	UniRef90	UniRef90_A0A413VL44	Serine/threonine protein kinase	NA
UHGV-0190677_30	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-0190677_31	PHROG	phrog_962	holin	lysis
UHGV-0190677_31	UniRef90	UniRef90_A0A0K9NH22	Holin, phage phi LC3 family	NA
UHGV-0190677_31	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-0190677_31	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0190677_31	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0190677_31	COG	COG5546	NA	NA
UHGV-0190677_31	Structural annotation	COG5546	NA	NA
UHGV-0190677_32	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0190677_32	PHROG	phrog_1015	tail protein with lysin activity	tail
UHGV-0190677_32	UniRef90	UniRef90_C6LKW9	NlpC/P60 domain-containing protein	NA
UHGV-0190677_32	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0190677_32	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0190677_32	Pfam	PF13946	NA	DUF4214
UHGV-0190677_33	eggNOG-mapper	633697.EubceDRAFT1_2400	NA	NA
UHGV-0190677_33	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-0190677_34	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0190677_34	UniRef90	UniRef90_UPI0009DD9BD5	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0190677_34	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-0190677_34	Pfam	PF05534	HicB family	HicB
UHGV-0190677_34	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0190677_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0190677_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0190677_35	UniRef90	UniRef90_UPI001C0393EB	recombinase family protein	NA
UHGV-0190677_35	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0190677_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0190677_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-0190677_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0190677_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0190677_35	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0190677_36	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0190677_36	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0190677_36	UniRef90	UniRef90_A0A1C7FYE4	HicB family protein	NA
UHGV-0190677_36	eggNOG-mapper	1235798.C817_01899	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0190677_36	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0190677_36	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0190677_36	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0190677_37	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0190677_37	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0190677_37	UniRef90	UniRef90_A0A174WGJ4	YcfA-like protein	NA
UHGV-0190677_37	eggNOG-mapper	1235798.C817_01898	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0190677_37	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0190677_37	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0190677_37	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0190677_38	PHROG	phrog_87	metallo-protease	other
UHGV-0190677_38	UniRef90	UniRef90_A0A396LGB6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0190677_38	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0190677_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0190677_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0190677_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0190677_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0190677_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190677_39	UniRef90	UniRef90_A0A3R6U3W2	XRE family transcriptional regulator	NA
UHGV-0190677_39	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0190677_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0190677_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190677_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190677_39	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190677_40	UniRef90	UniRef90_A0A417ACE5	HTH cro/C1-type domain-containing protein	NA
UHGV-0190677_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0190677_41	PHROG	phrog_17847	NA	unknown function
UHGV-0190677_41	eggNOG-mapper	397288.C806_04258	NA	NA
UHGV-0190677_41	Pfam	PF18828	Large polyvalent-protein-associated domain 15	LPD15
UHGV-0190677_41	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-0190677_47	PHROG	phrog_3777	NA	unknown function
UHGV-0190677_47	Structural annotation	PF18441	NA	NA
UHGV-0190677_48	PHROG	phrog_31564	NA	unknown function
UHGV-0190677_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0190677_51	UniRef90	UniRef90_UPI00188A68AB	siphovirus Gp157 family protein	NA
UHGV-0190677_51	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0190677_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0190677_51	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0190677_52	PHROG	phrog_14970	NA	unknown function
UHGV-0190677_52	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0190677_52	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0190677_52	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0190677_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190677_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190677_53	UniRef90	UniRef90_UPI001A421FF0	single-stranded DNA-binding protein	NA
UHGV-0190677_53	eggNOG-mapper	1410632.JHWW01000001_gene1026	Single-strand binding protein family	NA
UHGV-0190677_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190677_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190677_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190677_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190677_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0190677_54	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0190677_54	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0190677_54	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0190677_55	UniRef90	UniRef90_UPI00082FB90B	HNH endonuclease	NA
UHGV-0190677_55	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0190677_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0190677_56	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190677_56	UniRef90	UniRef90_UPI001BC1CA28	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0190677_56	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0190677_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0190677_56	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0190677_58	PHROG	phrog_16304	NA	unknown function
UHGV-0190677_58	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0190677_58	Pfam	PF19808	NA	DUF6291
UHGV-0190677_58	Structural annotation	PF19808	NA	NA
UHGV-0190677_59	Pfam	PF01381	Helix-turn-helix	HTH_3