UHGV-0190771

Genome information

Genome length 31,993 bps

CDS count 57

Completeness 90.94% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190771
vOTU ID	vOTU-011283
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737756_b1_ct10_vs2@Siphoviridae__sp._ctjR010@linear
BioSample	SAMEA2737756
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.8
Jumbo phage	No

Genome content
Genome length	31,993 bps
GC content	42.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.28%
Average CDS length	500.90 bps
tRNA count	7
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190771_1	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0190771_3	PHROG	phrog_13141	NA	unknown function
UHGV-0190771_3	UniRef90	UniRef90_UPI00156D68EE	H-type lectin domain-containing protein	NA
UHGV-0190771_3	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0190771_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0190771_4	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0190771_4	eggNOG-mapper	411461.DORFOR_01177	NA	NA
UHGV-0190771_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0190771_4	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0190771_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0190771_5	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0190771_5	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0190771_5	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0190771_6	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0190771_6	UniRef90	UniRef90_A0A415MTD4	Phage tail tape measure protein	NA
UHGV-0190771_6	eggNOG-mapper	1336234.JAGN01000004_gene517	Phage-related minor tail protein	NA
UHGV-0190771_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0190771_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0190771_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0190771_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0190771_9	UniRef90	UniRef90_UPI00040253E3	SAP domain-containing protein	NA
UHGV-0190771_9	Pfam	PF02037	SAP domain	SAP
UHGV-0190771_9	Structural annotation	PF21169	NA	NA
UHGV-0190771_10	UniRef90	UniRef90_UPI00156FB996	phage tail protein	NA
UHGV-0190771_10	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0190771_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0190771_11	PHROG	phrog_5509	neck protein	connector
UHGV-0190771_11	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-0190771_11	eggNOG-mapper	1450694.BTS2_0537	NA	NA
UHGV-0190771_11	Structural annotation	TIGR01725	NA	NA
UHGV-0190771_12	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0190771_13	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0190771_13	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0190771_13	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-0190771_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0190771_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190771_14	PHROG	phrog_749	NA	unknown function
UHGV-0190771_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190771_15	UniRef90	UniRef90_UPI00156ED36D	phage major capsid protein	NA
UHGV-0190771_15	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0190771_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190771_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190771_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190771_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190771_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0190771_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0190771_16	UniRef90	UniRef90_A0A415MTD8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0190771_16	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0190771_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0190771_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0190771_16	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0190771_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190771_17	UniRef90	UniRef90_A0A415MTC5	Phage portal protein	NA
UHGV-0190771_17	eggNOG-mapper	1307436.PBF_22063	Phage portal protein	NA
UHGV-0190771_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190771_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190771_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0190771_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190771_18	UniRef90	UniRef90_A0A415MTC4	Terminase large subunit	NA
UHGV-0190771_18	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0190771_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190771_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190771_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190771_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0190771_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0190771_19	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0190771_19	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0190771_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0190771_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0190771_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0190771_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190771_21	UniRef90	UniRef90_A0A415MTD9	HNH endonuclease	NA
UHGV-0190771_21	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0190771_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0190771_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190771_23	UniRef90	UniRef90_A0A174BR74	Chemotaxis protein	NA
UHGV-0190771_23	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0190771_23	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0190771_24	AcrCatalog	cluster_86620	NA	NA
UHGV-0190771_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190771_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0190771_25	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0190771_25	Structural annotation	PF02996	NA	NA
UHGV-0190771_29	eggNOG-mapper	411902.CLOBOL_05678	NA	NA
UHGV-0190771_30	PHROG	phrog_8684	NA	unknown function
UHGV-0190771_30	UniRef90	UniRef90_UPI001C0F317C	YopX family protein	NA
UHGV-0190771_30	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0190771_30	Pfam	PF09643	YopX protein	YopX
UHGV-0190771_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0190771_31	Structural annotation	PF09297, MF_00327	NA	NA
UHGV-0190771_34	PHROG	phrog_26445	NA	unknown function
UHGV-0190771_34	UniRef90	UniRef90_A0A396KW66	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0190771_34	eggNOG-mapper	97139.C824_05982	NA	NA
UHGV-0190771_34	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0190771_35	PHROG	phrog_17690	NA	unknown function
UHGV-0190771_35	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0190771_35	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0190771_37	PHROG	phrog_7566	NA	unknown function
UHGV-0190771_37	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0190771_38	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0190771_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0190771_38	UniRef90	UniRef90_A0A417QGM0	DNA methylase N-4	NA
UHGV-0190771_38	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0190771_38	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0190771_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0190771_38	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0190771_38	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0190771_40	UniRef90	UniRef90_A0A396L6U7	Winged helix-turn-helix domain-containing protein	NA
UHGV-0190771_40	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0190771_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0190771_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0190771_41	UniRef90	UniRef90_A0A396LDY6	RNase H type-1 domain-containing protein	NA
UHGV-0190771_41	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0190771_41	Pfam	PF00075	RNase H	RNase_H
UHGV-0190771_41	COG	COG0328	Ribonuclease HI	NA
UHGV-0190771_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190771_42	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0190771_42	Structural annotation	PF01446	NA	NA
UHGV-0190771_50	PHROG	phrog_36464	NA	unknown function
UHGV-0190771_50	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0190771_50	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0190771_50	Structural annotation	PF09035	NA	NA
UHGV-0190771_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0190771_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0190771_54	UniRef90	UniRef90_A0A1C5Y7R9	Antitoxin PezA	NA
UHGV-0190771_54	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190771_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190771_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190771_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190771_56	PHROG	phrog_7115	NA	unknown function
UHGV-0190771_56	UniRef90	UniRef90_A0A396KU40	PH domain-containing protein	NA
UHGV-0190771_56	eggNOG-mapper	1280698.AUJS01000007_gene1000	Bacterial PH domain	NA
UHGV-0190771_56	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0190771_57	KOfam	K14059	int; integrase	NA
UHGV-0190771_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0190771_57	UniRef90	UniRef90_A0A396L6T7	Site-specific integrase	NA
UHGV-0190771_57	eggNOG-mapper	411461.DORFOR_01126	Phage integrase family	NA
UHGV-0190771_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190771_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190771_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA