UHGV-0190815

Genome information

Genome length 40,313 bps

CDS count 55

Completeness 99.78% (high-quality)

geNomad score 0.9595

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190815
vOTU ID	vOTU-061118
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598226
BioSample	SAMN10407349
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9595
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.02
Jumbo phage	No

Genome content
Genome length	40,313 bps
GC content	55.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.64%
Average CDS length	660.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190815_2	UniRef90	UniRef90_A0A374X3Z2	Flavodoxin_5 domain-containing protein	NA
UHGV-0190815_2	eggNOG-mapper	869209.Tresu_0597	NA	NA
UHGV-0190815_3	UniRef90	UniRef90_UPI001EF5C620	class II glutamine amidotransferase	NA
UHGV-0190815_3	Structural annotation	PF13230, MF_01931, TIGR01134, COG0121	NA	NA
UHGV-0190815_4	PHROG	phrog_16683	NA	unknown function
UHGV-0190815_4	UniRef90	UniRef90_A0A7X5E281	Zinc-binding protein	NA
UHGV-0190815_4	eggNOG-mapper	1007096.BAGW01000006_gene1758	Putative amidoligase enzyme	NA
UHGV-0190815_4	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0190815_4	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-0190815_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190815_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190815_8	UniRef90	UniRef90_A0A3C0NMR0	Single-stranded DNA-binding protein	NA
UHGV-0190815_8	eggNOG-mapper	742738.HMPREF9460_03732	Single-strand binding protein family	NA
UHGV-0190815_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190815_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190815_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190815_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190815_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0190815_9	Pfam	PF13619	KTSC domain	KTSC
UHGV-0190815_10	KOfam	K07493	K07493; putative transposase	NA
UHGV-0190815_10	PHROG	phrog_11688	transposase	integration and excision
UHGV-0190815_10	UniRef90	UniRef90_R6EYQ8	Mutator family transposase	NA
UHGV-0190815_10	eggNOG-mapper	1123313.ATUT01000006_gene1334	COG COG3328 Transposase and inactivated derivatives	NA
UHGV-0190815_10	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0190815_10	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0190815_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190815_12	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0190815_12	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0190815_12	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0190815_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190815_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190815_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0190815_14	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0190815_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0190815_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0190815_16	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0190815_16	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0190815_16	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0190815_16	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0190815_17	PHROG	phrog_1863	NA	unknown function
UHGV-0190815_17	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0190815_18	PHROG	phrog_1129	holin	lysis
UHGV-0190815_18	UniRef90	UniRef90_A0A1M5CY75	Phage holin family Hol44, holin superfamily V	NA
UHGV-0190815_18	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0190815_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0190815_18	Structural annotation	PF06946	NA	NA
UHGV-0190815_19	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0190815_19	Structural annotation	PF11650	NA	NA
UHGV-0190815_20	Structural annotation	PF16677	NA	NA
UHGV-0190815_21	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0190815_21	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0190815_21	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0190815_21	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0190815_22	PHROG	phrog_892	tail fiber protein	tail
UHGV-0190815_23	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-0190815_26	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0190815_26	UniRef90	UniRef90_UPI001D08F33D	NA	NA
UHGV-0190815_26	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0190815_26	Pfam	PF14359	NA	DUF4406
UHGV-0190815_26	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0190815_27	PHROG	phrog_27545	NA	unknown function
UHGV-0190815_27	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0190815_28	PHROG	phrog_20388	endolysin	lysis
UHGV-0190815_28	UniRef90	UniRef90_A0A2I0N350	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0190815_28	eggNOG-mapper	1121296.JONJ01000026_gene2168	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0190815_28	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0190815_28	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0190815_28	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0190815_28	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0190815_29	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0190815_30	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0190815_31	Pfam	PF11950	NA	DUF3467
UHGV-0190815_32	PHROG	phrog_36767	NA	unknown function
UHGV-0190815_32	eggNOG-mapper	649747.HMPREF0083_01019	NA	NA
UHGV-0190815_32	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0190815_33	PHROG	phrog_5931	NA	unknown function
UHGV-0190815_33	eggNOG-mapper	35760.BCHO_0887	NA	NA
UHGV-0190815_35	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190815_35	UniRef90	UniRef90_A0A098TQT2	Holliday junction endonuclease	NA
UHGV-0190815_35	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0190815_35	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0190815_35	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0190815_37	PHROG	phrog_22543	NA	unknown function
UHGV-0190815_43	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0190815_43	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0190815_43	UniRef90	UniRef90_A0A1H5VT64	Deoxyuridine 5'-triphosphate nucleotidohydrolase (Dut)	NA
UHGV-0190815_43	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0190815_43	Pfam	PF00692	dUTPase	dUTPase
UHGV-0190815_43	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0190815_43	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0190815_43	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0190815_44	PHROG	phrog_9804	NA	unknown function
UHGV-0190815_44	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0190815_44	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0190815_44	AcrCatalog	cluster_137185	NA	NA
UHGV-0190815_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0190815_44	Structural annotation	PF11417	NA	NA
UHGV-0190815_46	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0190815_46	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0190815_46	eggNOG-mapper	1129145.H2BD49_9CAUD	DNA metabolic process	NA
UHGV-0190815_46	Pfam	PF03837	RecT family	RecT
UHGV-0190815_46	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0190815_48	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190815_48	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0190815_48	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0190815_51	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0190815_53	UniRef90	UniRef90_A0A7X5IRY2	XRE family transcriptional regulator	NA
UHGV-0190815_53	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0190815_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190815_53	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0190815_55	KOfam	K14059	int; integrase	NA
UHGV-0190815_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0190815_55	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0190815_55	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0190815_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190815_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190815_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA