UHGV-0190831

Genome information

Genome length 42,127 bps

CDS count 78

Completeness 59.33% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190831
vOTU ID	vOTU-029938
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598223
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.9
Jumbo phage	No

Genome content
Genome length	42,127 bps
GC content	55.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	89.86%
Average CDS length	487.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190831_2	PHROG	phrog_1129	holin	lysis
UHGV-0190831_2	UniRef90	UniRef90_A0A1Q6RI18	Enolase	NA
UHGV-0190831_2	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0190831_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0190831_2	Structural annotation	PF06946	NA	NA
UHGV-0190831_4	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0190831_4	Structural annotation	PF07878, TIGR04563, COG4877	NA	NA
UHGV-0190831_5	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190831_5	UniRef90	UniRef90_A0A3R6RDR5	GIY-YIG domain-containing protein	NA
UHGV-0190831_5	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0190831_5	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0190831_5	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0190831_5	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0190831_5	COG	COG3860	NA	NA
UHGV-0190831_5	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-0190831_6	PHROG	phrog_4088	NA	unknown function
UHGV-0190831_6	Structural annotation	PF03864, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190831_8	PHROG	phrog_3313	NA	unknown function
UHGV-0190831_8	Structural annotation	PF09979, TIGR01543, COG3740	NA	NA
UHGV-0190831_9	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0190831_10	PHROG	phrog_2739	portal protein	head and packaging
UHGV-0190831_10	Structural annotation	PF07230, MF_04135, TIGR01537, COG5511	NA	NA
UHGV-0190831_12	eggNOG-mapper	881953.E0YJ34_9CAUD	NA	NA
UHGV-0190831_12	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0190831_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0190831_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190831_14	UniRef90	UniRef90_UPI00195A6681	helix-turn-helix domain-containing protein	NA
UHGV-0190831_14	eggNOG-mapper	1121085.AUCI01000010_gene502	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190831_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190831_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190831_14	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0190831_16	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0190831_24	PHROG	phrog_3136	NA	unknown function
UHGV-0190831_24	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0190831_24	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0190831_24	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0190831_25	PHROG	phrog_38832	NA	unknown function
UHGV-0190831_27	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0190831_27	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0190831_27	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0190831_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190831_27	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0190831_28	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0190831_28	PHROG	phrog_17284	NA	unknown function
UHGV-0190831_28	UniRef90	UniRef90_UPI001EDDC2F3	DNA cytosine methyltransferase	NA
UHGV-0190831_28	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0190831_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0190831_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190831_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0190831_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0190831_31	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0190831_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190831_34	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-0190831_34	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0190831_34	Pfam	PF06356	NA	DUF1064
UHGV-0190831_34	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0190831_36	PHROG	phrog_9804	NA	unknown function
UHGV-0190831_36	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0190831_36	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0190831_36	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0190831_36	Structural annotation	PF11417	NA	NA
UHGV-0190831_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0190831_37	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0190831_37	UniRef90	UniRef90_A0A843HUK3	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0190831_37	eggNOG-mapper	469604.HMPREF0946_01101	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0190831_37	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0190831_37	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0190831_37	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0190831_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190831_38	Structural annotation	PF00436, MF_00984, TIGR00621, COG2965	NA	NA
UHGV-0190831_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0190831_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0190831_39	UniRef90	UniRef90_UPI0012DD5B14	recombinase RecT	NA
UHGV-0190831_39	eggNOG-mapper	1211844.CBLM010000016_gene1512	RecT family	NA
UHGV-0190831_39	Pfam	PF03837	RecT family	RecT
UHGV-0190831_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0190831_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0190831_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0190831_40	PHROG	phrog_674	NA	unknown function
UHGV-0190831_40	UniRef90	UniRef90_UPI000428A750	NA	NA
UHGV-0190831_40	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-0190831_40	Pfam	PF07083	NA	DUF1351
UHGV-0190831_40	Structural annotation	PF07083	NA	NA
UHGV-0190831_41	Structural annotation	PF17764	NA	NA
UHGV-0190831_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190831_43	UniRef90	UniRef90_UPI001898139F	YqaJ viral recombinase family protein	NA
UHGV-0190831_43	eggNOG-mapper	1121441.AUCX01000014_gene536	YqaJ-like viral recombinase domain	NA
UHGV-0190831_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0190831_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0190831_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0190831_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0190831_44	PHROG	phrog_19890	NA	unknown function
UHGV-0190831_44	UniRef90	UniRef90_A0A6I2R0Q9	Transglycosylase SLT domain-containing protein	NA
UHGV-0190831_44	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-0190831_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0190831_44	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0190831_44	Structural annotation	PF19489, MF_01616, NF011856, COG0741	NA	NA
UHGV-0190831_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190831_46	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0190831_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190831_47	UniRef90	UniRef90_A0A433R816	Bro-N domain-containing protein	NA
UHGV-0190831_47	eggNOG-mapper	696281.Desru_3569	BRO family, N-terminal domain	NA
UHGV-0190831_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190831_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0190831_47	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0190831_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0190831_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190831_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0190831_49	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-0190831_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190831_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190831_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190831_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190831_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190831_51	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0190831_52	KOfam	K14059	int; integrase	NA
UHGV-0190831_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0190831_52	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-0190831_52	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0190831_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190831_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190831_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0190831_53	PHROG	phrog_3136	NA	unknown function
UHGV-0190831_53	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0190831_53	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0190831_53	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0190831_53	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0190831_54	PHROG	phrog_8684	NA	unknown function
UHGV-0190831_54	UniRef90	UniRef90_A0A373CDP9	YopX domain-containing protein	NA
UHGV-0190831_54	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0190831_54	Pfam	PF09643	YopX protein	YopX
UHGV-0190831_54	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0190831_55	PHROG	phrog_38832	NA	unknown function
UHGV-0190831_55	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0190831_55	Structural annotation	PF10781	NA	NA
UHGV-0190831_56	PHROG	phrog_5781	NA	unknown function
UHGV-0190831_56	UniRef90	UniRef90_A0A2V2GDQ1	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0190831_56	eggNOG-mapper	255431.Q6UAS4_9CAUD	NA	NA
UHGV-0190831_56	Pfam	PF14359	NA	DUF4406
UHGV-0190831_56	Structural annotation	PF14359, MF_00510, TIGR03646, COG3613	NA	NA
UHGV-0190831_57	Structural annotation	PF18337, NF037951	NA	NA
UHGV-0190831_60	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0190831_60	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0190831_60	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0190831_60	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0190831_60	Structural annotation	PF05869, MF_00607, TIGR01712, COG0286	NA	NA
UHGV-0190831_61	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0190831_61	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0190831_61	UniRef90	UniRef90_A0A7X8MLD3	Methyltransferase	NA
UHGV-0190831_61	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0190831_61	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0190831_61	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0190831_61	COG	COG0863	DNA modification methylase	NA
UHGV-0190831_61	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0190831_62	PHROG	phrog_10867	NA	unknown function
UHGV-0190831_65	PHROG	phrog_3543	NA	unknown function
UHGV-0190831_65	UniRef90	UniRef90_UPI001EF82D45	NA	NA
UHGV-0190831_65	eggNOG-mapper	1196031.ALEG01000041_gene2681	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein	NA
UHGV-0190831_65	COG	COG0664	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	NA
UHGV-0190831_65	Structural annotation	PF12098, MF_01160, NF041095, COG1993	NA	NA
UHGV-0190831_70	Structural annotation	PF19891, NF010432	NA	NA
UHGV-0190831_72	PHROG	phrog_13890	NA	unknown function
UHGV-0190831_72	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0190831_72	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA