UHGV-0190917

Genome information

Genome length 30,748 bps

CDS count 45

Completeness 73.07% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190917
vOTU ID	vOTU-029946
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596209
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.18
Jumbo phage	No

Genome content
Genome length	30,748 bps
GC content	51.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.58%
Average CDS length	644.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190917_1	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0190917_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0190917_2	PHROG	phrog_291	endolysin	lysis
UHGV-0190917_2	UniRef90	UniRef90_A0A6S6X8V6	Putative Lysozyme	NA
UHGV-0190917_2	eggNOG-mapper	1415775.U729_2621	Glycosyl hydrolases family 25	NA
UHGV-0190917_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190917_2	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0190917_2	COG	COG3103	NA	NA
UHGV-0190917_2	Structural annotation	PF01183, PF19127, TIGR04035, TIGR04303, COG3757	NA	NA
UHGV-0190917_3	Structural annotation	PF12802	NA	NA
UHGV-0190917_4	PHROG	phrog_443	holin	lysis
UHGV-0190917_4	UniRef90	UniRef90_UPI000C852E5F	holin	NA
UHGV-0190917_4	eggNOG-mapper	397288.C806_00055	Putative lactococcus lactis phage r1t holin	NA
UHGV-0190917_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0190917_4	Structural annotation	PF16945	NA	NA
UHGV-0190917_5	PHROG	phrog_1863	NA	unknown function
UHGV-0190917_5	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0190917_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0190917_7	Structural annotation	PF20622	NA	NA
UHGV-0190917_8	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0190917_9	PHROG	phrog_6616	tail protein	tail
UHGV-0190917_9	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0190917_9	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0190917_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0190917_10	PHROG	phrog_1194	NA	unknown function
UHGV-0190917_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0190917_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190917_11	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0190917_11	COG	COG5412	Phage-related protein	NA
UHGV-0190917_12	PHROG	phrog_706	NA	unknown function
UHGV-0190917_12	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0190917_12	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0190917_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0190917_12	Structural annotation	PF06854	NA	NA
UHGV-0190917_13	PHROG	phrog_11299	NA	unknown function
UHGV-0190917_13	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0190917_13	Structural annotation	PF10666	NA	NA
UHGV-0190917_14	PHROG	phrog_3099	NA	unknown function
UHGV-0190917_14	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0190917_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0190917_15	PHROG	phrog_3266	tail completion	connector
UHGV-0190917_15	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0190917_15	Structural annotation	PF12691	NA	NA
UHGV-0190917_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0190917_16	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0190917_16	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0190917_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0190917_16	Structural annotation	PF11114	NA	NA
UHGV-0190917_17	PHROG	phrog_3366	NA	unknown function
UHGV-0190917_17	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0190917_17	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0190917_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0190917_18	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0190917_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0190917_19	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0190917_19	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0190917_19	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0190917_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0190917_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0190917_20	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0190917_20	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0190917_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0190917_21	UniRef90	UniRef90_UPI00115DF975	cysteine-rich KTR domain-containing protein	NA
UHGV-0190917_21	eggNOG-mapper	1235792.C808_01273	Cysteine-rich KTR	NA
UHGV-0190917_21	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0190917_21	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0190917_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0190917_22	UniRef90	UniRef90_A0A1C5M9T1	Phage minor capsid protein 2	NA
UHGV-0190917_22	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0190917_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0190917_22	COG	COG2369	NA	NA
UHGV-0190917_22	Structural annotation	PF06152	NA	NA
UHGV-0190917_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0190917_23	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0190917_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0190917_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0190917_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190917_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0190917_24	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0190917_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0190917_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190917_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0190917_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0190917_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0190917_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190917_25	PHROG	phrog_33130	NA	unknown function
UHGV-0190917_25	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0190917_25	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0190917_26	PHROG	phrog_21498	NA	unknown function
UHGV-0190917_26	UniRef90	UniRef90_A0A4Q5AKJ0	Chromosome partitioning protein ParB	NA
UHGV-0190917_26	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0190917_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190917_26	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0190917_28	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0190917_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0190917_33	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-0190917_33	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0190917_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0190917_33	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0190917_34	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0190917_34	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0190917_34	eggNOG-mapper	760568.Desku_0784	DNA N-6-adenine-methyltransferase	NA
UHGV-0190917_34	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0190917_34	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0190917_34	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0190917_35	UniRef90	UniRef90_UPI001C0289B9	NA	NA
UHGV-0190917_35	Pfam	PF04448	NA	DUF551
UHGV-0190917_35	Structural annotation	NF041588	NA	NA
UHGV-0190917_37	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0190917_37	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0190917_39	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0190917_39	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0190917_40	Structural annotation	PF21291	NA	NA
UHGV-0190917_41	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0190917_42	PHROG	phrog_16304	NA	unknown function
UHGV-0190917_42	UniRef90	UniRef90_UPI001CFF63BE	NA	NA
UHGV-0190917_42	eggNOG-mapper	565664.EFXG_01145	Helix-turn-helix domain	NA
UHGV-0190917_42	Pfam	PF19808	NA	DUF6291
UHGV-0190917_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0190917_42	Structural annotation	PF19808	NA	NA
UHGV-0190917_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190917_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190917_43	UniRef90	UniRef90_A0A2V2CEG7	Single-stranded DNA-binding protein	NA
UHGV-0190917_43	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0190917_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190917_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190917_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190917_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190917_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0190917_44	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0190917_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0190917_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0190917_44	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA