UHGV-0190936

Genome information

Genome length 49,349 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190936
vOTU ID	vOTU-063990
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598823
BioSample	SAMN10407346
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.46
Jumbo phage	No

Genome content
Genome length	49,349 bps
GC content	53.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	91.47%
Average CDS length	604.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190936_1	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0190936_2	PHROG	phrog_14030	NA	unknown function
UHGV-0190936_2	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0190936_2	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0190936_2	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0190936_3	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0190936_5	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0190936_5	Structural annotation	PF10723	NA	NA
UHGV-0190936_6	PHROG	phrog_6160	NA	unknown function
UHGV-0190936_6	eggNOG-mapper	314345.SPV1_06379	NA	NA
UHGV-0190936_10	PHROG	phrog_16490	NA	unknown function
UHGV-0190936_10	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0190936_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0190936_12	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0190936_12	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0190936_13	KOfam	K14059	int; integrase	NA
UHGV-0190936_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0190936_13	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0190936_13	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0190936_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0190936_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190936_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190936_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0190936_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190936_14	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0190936_15	eggNOG-mapper	500632.CLONEX_03087	NOG18738 non supervised orthologous group	NA
UHGV-0190936_15	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0190936_15	Structural annotation	PF02805	NA	NA
UHGV-0190936_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190936_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190936_17	UniRef90	UniRef90_A0A1H6V6K6	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190936_17	eggNOG-mapper	1392502.JNIO01000008_gene1592	Transcriptional	NA
UHGV-0190936_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0190936_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190936_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190936_17	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0190936_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0190936_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0190936_18	UniRef90	UniRef90_UPI00189818F3	helix-turn-helix domain-containing protein	NA
UHGV-0190936_18	eggNOG-mapper	118168.MC7420_7098	Helix-turn-helix domain	NA
UHGV-0190936_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190936_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190936_19	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0190936_20	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0190936_20	UniRef90	UniRef90_UPI0019565003	helix-turn-helix transcriptional regulator	NA
UHGV-0190936_20	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190936_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190936_20	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0190936_20	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0190936_21	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0190936_21	UniRef90	UniRef90_UPI00195619BC	helix-turn-helix domain-containing protein	NA
UHGV-0190936_21	eggNOG-mapper	862514.HMPREF0623_0270	Helix-turn-helix domain	NA
UHGV-0190936_21	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0190936_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0190936_21	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0190936_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0190936_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0190936_22	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0190936_22	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0190936_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0190936_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0190936_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0190936_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0190936_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0190936_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0190936_23	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0190936_23	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0190936_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-0190936_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0190936_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0190936_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0190936_24	PHROG	phrog_27290	NA	unknown function
UHGV-0190936_24	UniRef90	UniRef90_A0A845R940	ParB domain-containing protein	NA
UHGV-0190936_24	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0190936_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0190936_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0190936_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0190936_25	Structural annotation	PF10013	NA	NA
UHGV-0190936_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0190936_29	Structural annotation	PF05129, NF007260	NA	NA
UHGV-0190936_30	PHROG	phrog_38832	NA	unknown function
UHGV-0190936_30	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0190936_31	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0190936_31	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0190936_31	eggNOG-mapper	693746.OBV_25310	HNH endonuclease	NA
UHGV-0190936_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0190936_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190936_31	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0190936_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0190936_33	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0190936_33	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0190936_39	UniRef90	UniRef90_A0A374AB28	Thymidylate synthase ThyX	NA
UHGV-0190936_39	eggNOG-mapper	397290.C810_01371	NA	NA
UHGV-0190936_39	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0190936_39	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0190936_40	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0190936_40	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0190936_40	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0190936_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0190936_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0190936_42	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0190936_42	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0190936_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-0190936_42	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0190936_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0190936_42	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0190936_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190936_43	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0190936_44	Structural annotation	PF17917	NA	NA
UHGV-0190936_46	PHROG	phrog_15863	NA	unknown function
UHGV-0190936_46	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0190936_46	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0190936_46	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0190936_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190936_49	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0190936_49	UniRef90	UniRef90_G4KR97	Terminase_3 domain-containing protein	NA
UHGV-0190936_49	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0190936_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0190936_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190936_49	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0190936_50	eggNOG-mapper	693746.OBV_01730	NA	NA
UHGV-0190936_50	Structural annotation	PF11650	NA	NA
UHGV-0190936_51	PHROG	phrog_14606	NA	unknown function
UHGV-0190936_51	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0190936_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-0190936_52	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0190936_52	eggNOG-mapper	1408437.JNJN01000001_gene1710	NA	NA
UHGV-0190936_52	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0190936_52	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0190936_53	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0190936_53	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0190936_53	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0190936_53	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0190936_55	PHROG	phrog_156	portal protein	head and packaging
UHGV-0190936_55	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0190936_55	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0190936_56	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0190936_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0190936_57	Structural annotation	PF02973	NA	NA
UHGV-0190936_58	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0190936_58	UniRef90	UniRef90_A0A350TI55	NA	NA
UHGV-0190936_58	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-0190936_58	Pfam	PF19789	NA	DUF6273
UHGV-0190936_58	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0190936_58	Structural annotation	PF19789	NA	NA
UHGV-0190936_59	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0190936_60	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0190936_61	UniRef90	UniRef90_A0A1C6H462	LPD3 domain-containing protein	NA
UHGV-0190936_61	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0190936_61	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0190936_61	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0190936_62	PHROG	phrog_937	hemolysin	other
UHGV-0190936_63	PHROG	phrog_443	holin	lysis
UHGV-0190936_63	UniRef90	UniRef90_UPI001BB47E53	holin	NA
UHGV-0190936_63	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-0190936_63	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0190936_63	Structural annotation	PF16945	NA	NA
UHGV-0190936_64	PHROG	phrog_14030	NA	unknown function
UHGV-0190936_64	UniRef90	UniRef90_A0A133ZYW3	Cell wall-binding repeat protein	NA
UHGV-0190936_64	eggNOG-mapper	1095750.HMPREF9970_0318	Putative cell wall binding repeat	NA
UHGV-0190936_64	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0190936_65	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0190936_68	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0190936_69	KOfam	K14059	int; integrase	NA
UHGV-0190936_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0190936_69	UniRef90	UniRef90_A0A6L5YHU4	Tyrosine-type recombinase/integrase	NA
UHGV-0190936_69	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0190936_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190936_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190936_69	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0190936_70	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0190936_72	UniRef90	UniRef90_UPI001BB2F187	helix-turn-helix domain-containing protein	NA
UHGV-0190936_72	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0190936_72	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0190936_73	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0190936_74	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0190936_74	UniRef90	UniRef90_UPI001C1245AB	helix-turn-helix domain-containing protein	NA
UHGV-0190936_74	eggNOG-mapper	1347392.CCEZ01000031_gene1729	Helix-turn-helix	NA
UHGV-0190936_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190936_74	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA