UHGV-0190986

Genome information

Genome length 29,350 bps

CDS count 30

Completeness 70.33% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0190986
vOTU ID	vOTU-022954
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737824_a1_ct52349_vs1@Siphoviridae__sp._ctSXH1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.21
Jumbo phage	No

Genome content
Genome length	29,350 bps
GC content	45.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.60%
Average CDS length	907.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190986_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0190986_3	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0190986_3	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-0190986_3	Structural annotation	PF02996	NA	NA
UHGV-0190986_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190986_4	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0190986_4	UniRef90	UniRef90_UPI001592B6B8	terminase small subunit	NA
UHGV-0190986_4	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0190986_4	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0190986_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190986_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0190986_4	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0190986_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0190986_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0190986_5	UniRef90	UniRef90_R5ILS3	Phage terminase large subunit PBSX family	NA
UHGV-0190986_5	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0190986_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0190986_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0190986_5	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0190986_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0190986_6	UniRef90	UniRef90_A0A396QLL8	Phage portal protein	NA
UHGV-0190986_6	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0190986_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0190986_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0190986_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0190986_7	UniRef90	UniRef90_A0A396Q8K1	Minor capsid protein	NA
UHGV-0190986_7	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0190986_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0190986_7	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0190986_7	COG	COG2369	NA	NA
UHGV-0190986_7	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0190986_8	eggNOG-mapper	476272.RUMHYD_02848	NA	NA
UHGV-0190986_8	Structural annotation	PF16244	NA	NA
UHGV-0190986_9	PHROG	phrog_918	NA	unknown function
UHGV-0190986_9	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0190986_9	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0190986_9	Pfam	PF19791	NA	DUF6275
UHGV-0190986_9	Structural annotation	PF19791	NA	NA
UHGV-0190986_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0190986_10	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0190986_10	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0190986_10	Pfam	PF14359	NA	DUF4406
UHGV-0190986_10	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0190986_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0190986_11	UniRef90	UniRef90_UPI001923CA74	phage scaffolding protein	NA
UHGV-0190986_11	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0190986_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0190986_11	Structural annotation	PF06810	NA	NA
UHGV-0190986_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190986_12	UniRef90	UniRef90_A0A3R6X865	Phage major capsid protein	NA
UHGV-0190986_12	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0190986_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190986_12	Pfam	PF08308	PEGA domain	PEGA
UHGV-0190986_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190986_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190986_12	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190986_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0190986_13	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0190986_14	PHROG	phrog_3366	NA	unknown function
UHGV-0190986_14	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0190986_14	Pfam	PF20536	NA	DUF6751
UHGV-0190986_14	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0190986_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0190986_15	UniRef90	UniRef90_UPI0015948E32	minor capsid protein	NA
UHGV-0190986_15	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0190986_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0190986_15	Structural annotation	PF11114	NA	NA
UHGV-0190986_16	PHROG	phrog_3266	tail completion	connector
UHGV-0190986_16	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0190986_16	Structural annotation	PF20765	NA	NA
UHGV-0190986_17	PHROG	phrog_3099	NA	unknown function
UHGV-0190986_17	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0190986_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0190986_18	PHROG	phrog_11299	NA	unknown function
UHGV-0190986_18	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-0190986_18	Structural annotation	PF10666	NA	NA
UHGV-0190986_19	PHROG	phrog_706	NA	unknown function
UHGV-0190986_19	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-0190986_19	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0190986_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0190986_19	Structural annotation	PF06854	NA	NA
UHGV-0190986_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0190986_20	UniRef90	UniRef90_A0A1H7MQ92	Phage-related protein	NA
UHGV-0190986_20	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0190986_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0190986_21	PHROG	phrog_1194	NA	unknown function
UHGV-0190986_21	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0190986_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0190986_22	PHROG	phrog_13879	NA	unknown function
UHGV-0190986_22	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0190986_22	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0190986_23	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0190986_24	PHROG	phrog_30220	NA	unknown function
UHGV-0190986_24	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0190986_24	Structural annotation	PF20620, NF038128	NA	NA
UHGV-0190986_26	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0190986_26	UniRef90	UniRef90_A0A3P1XMC3	T9SS C-terminal target domain-containing protein	NA
UHGV-0190986_26	eggNOG-mapper	1408416.JNJT01000002_gene156	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0190986_26	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0190986_26	COG	COG5492	NA	NA
UHGV-0190986_27	Structural annotation	PF21602, PF00544, PF13385, NF007517, NF007636	NA	NA
UHGV-0190986_28	PHROG	phrog_199	holin	lysis
UHGV-0190986_28	UniRef90	UniRef90_D7GNX5	Toxin secretion/phage lysis holin	NA
UHGV-0190986_28	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0190986_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0190986_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0190986_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0190986_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0190986_29	UniRef90	UniRef90_A0A416IJF5	Molybdenum cofactor biosynthesis protein MoaD	NA
UHGV-0190986_30	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0190986_30	PHROG	phrog_2649	endolysin	lysis
UHGV-0190986_30	UniRef90	UniRef90_A0A3R6TWE4	Peptidase_M15_4 domain-containing protein	NA
UHGV-0190986_30	eggNOG-mapper	411902.CLOBOL_06235	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0190986_30	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0190986_30	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0190986_30	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0190986_30	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA