UHGV-0191208

Genome information

Genome length 56,597 bps

CDS count 88

Completeness 99.90% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191208
vOTU ID	vOTU-011294
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596866
BioSample	SAMN09781785
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.73
Jumbo phage	No

Genome content
Genome length	56,597 bps
GC content	56.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	90.54%
Average CDS length	585.85 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191208_1	PHROG	phrog_4019	NA	unknown function
UHGV-0191208_1	UniRef90	UniRef90_F9PY75	Conserved domain protein	NA
UHGV-0191208_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0191208_4	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0191208_4	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0191208_5	UniRef90	UniRef90_A0A7X4ZJI5	Conjugal transfer protein	NA
UHGV-0191208_5	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0191208_5	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0191208_5	Structural annotation	PF14205	NA	NA
UHGV-0191208_6	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191208_6	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0191208_6	eggNOG-mapper	588581.Cpap_1277	HNH nucleases	NA
UHGV-0191208_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0191208_7	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0191208_7	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0191208_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0191208_8	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0191208_8	eggNOG-mapper	913865.DOT_5636	Phage Terminase	NA
UHGV-0191208_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0191208_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0191208_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0191208_8	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0191208_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0191208_9	UniRef90	UniRef90_A0A559U357	HK97 family phage portal protein	NA
UHGV-0191208_9	eggNOG-mapper	491915.Aflv_0662	Phage portal protein	NA
UHGV-0191208_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0191208_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0191208_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0191208_9	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0191208_10	KOfam	K06904	NA	NA
UHGV-0191208_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0191208_10	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0191208_10	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0191208_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0191208_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0191208_10	COG	COG3740	Phage head maturation protease	NA
UHGV-0191208_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0191208_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0191208_11	UniRef90	UniRef90_A0A2N1PHH4	Phage major capsid protein	NA
UHGV-0191208_11	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0191208_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0191208_11	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0191208_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0191208_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0191208_11	Structural annotation	PF05065, PF18316, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0191208_12	PHROG	phrog_88	major tail protein	tail
UHGV-0191208_12	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0191208_12	COG	COG5492	NA	NA
UHGV-0191208_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0191208_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0191208_15	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0191208_16	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0191208_18	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0191208_18	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0191208_18	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0191208_19	PHROG	phrog_13564	minor tail protein	tail
UHGV-0191208_19	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0191208_20	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0191208_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0191208_24	PHROG	phrog_7698	endolysin	lysis
UHGV-0191208_24	UniRef90	UniRef90_A0A7X5I0X8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191208_24	eggNOG-mapper	665950.HMPREF1025_01587	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0191208_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0191208_24	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0191208_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191208_24	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0191208_25	PHROG	phrog_774	NA	unknown function
UHGV-0191208_25	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0191208_26	PHROG	phrog_1863	NA	unknown function
UHGV-0191208_26	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0191208_27	PHROG	phrog_1129	holin	lysis
UHGV-0191208_27	UniRef90	UniRef90_A0A3R6D6C4	Holin	NA
UHGV-0191208_27	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0191208_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0191208_27	Structural annotation	PF06946	NA	NA
UHGV-0191208_28	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0191208_31	PHROG	phrog_16490	NA	unknown function
UHGV-0191208_32	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0191208_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191208_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0191208_34	UniRef90	UniRef90_A0A6N9PWF3	Recombinase family protein (Fragment)	NA
UHGV-0191208_34	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0191208_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191208_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191208_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191208_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191208_34	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0191208_35	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0191208_35	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0191208_36	UniRef90	UniRef90_A0A174XWS3	Bacterial regulatory proteins, luxR family	NA
UHGV-0191208_36	eggNOG-mapper	1408311.JNJM01000015_gene2574	NA	NA
UHGV-0191208_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0191208_36	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0191208_36	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0191208_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0191208_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0191208_40	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0191208_42	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0191208_42	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0191208_42	UniRef90	UniRef90_R8W0C6	Exonuclease domain-containing protein	NA
UHGV-0191208_42	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0191208_42	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0191208_42	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0191208_42	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0191208_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0191208_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0191208_43	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-0191208_43	eggNOG-mapper	123214.PERMA_1798	sequence-specific DNA binding	NA
UHGV-0191208_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191208_43	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0191208_48	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0191208_48	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0191208_48	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0191208_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0191208_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0191208_48	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0191208_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0191208_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0191208_49	UniRef90	UniRef90_A0A1Y3ZTC3	DNA helicase	NA
UHGV-0191208_49	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0191208_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0191208_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0191208_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0191208_49	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0191208_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0191208_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0191208_51	UniRef90	UniRef90_UPI001D0205B9	AAA family ATPase	NA
UHGV-0191208_51	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0191208_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-0191208_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0191208_52	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0191208_52	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0191208_52	UniRef90	UniRef90_A0A3D4EI23	ParA family protein	NA
UHGV-0191208_52	eggNOG-mapper	742738.HMPREF9460_04050	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0191208_52	Pfam	PF13614	AAA domain	AAA_31
UHGV-0191208_52	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0191208_52	Structural annotation	PF01656, MF_00533, NF041546, COG1192	NA	NA
UHGV-0191208_53	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0191208_53	PHROG	phrog_27290	NA	unknown function
UHGV-0191208_53	UniRef90	UniRef90_G4L1G7	HTH cro/C1-type domain-containing protein	NA
UHGV-0191208_53	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0191208_53	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0191208_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0191208_53	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0191208_54	Structural annotation	PF06657	NA	NA
UHGV-0191208_55	PHROG	phrog_3136	NA	unknown function
UHGV-0191208_55	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0191208_55	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0191208_55	Pfam	PF04266	ASCH domain	ASCH
UHGV-0191208_55	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0191208_55	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0191208_58	Structural annotation	PF11998	NA	NA
UHGV-0191208_61	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0191208_61	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0191208_61	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0191208_61	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0191208_61	Structural annotation	PF16677	NA	NA
UHGV-0191208_63	PHROG	phrog_6244	NA	unknown function
UHGV-0191208_63	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0191208_65	eggNOG-mapper	1095770.CAHE01000085_gene1290	NA	NA
UHGV-0191208_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191208_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0191208_67	UniRef90	UniRef90_UPI0018973F04	recombinase family protein	NA
UHGV-0191208_67	eggNOG-mapper	1203606.HMPREF1526_00251	Resolvase, N terminal domain	NA
UHGV-0191208_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191208_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191208_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191208_67	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0191208_69	PHROG	phrog_6160	NA	unknown function
UHGV-0191208_69	eggNOG-mapper	37105.F8J1D6_9CAUD	NA	NA
UHGV-0191208_72	PHROG	phrog_1233	NA	unknown function
UHGV-0191208_72	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0191208_72	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0191208_73	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0191208_73	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0191208_73	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0191208_73	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0191208_73	COG	COG5410	NA	NA
UHGV-0191208_73	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0191208_74	PHROG	phrog_64	portal protein	head and packaging
UHGV-0191208_74	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0191208_74	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0191208_74	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0191208_74	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0191208_77	PHROG	phrog_247	major head protein	head and packaging
UHGV-0191208_77	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0191208_77	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0191208_77	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0191208_79	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0191208_79	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0191208_79	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0191208_79	Structural annotation	TIGR01560	NA	NA
UHGV-0191208_80	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0191208_81	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0191208_82	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0191208_83	PHROG	phrog_158	major tail protein	tail
UHGV-0191208_83	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0191208_83	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0191208_83	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0191208_84	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0191208_84	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0191208_84	Pfam	PF16478	NA	DUF5055
UHGV-0191208_84	Structural annotation	PF16478	NA	NA
UHGV-0191208_85	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0191208_86	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0191208_86	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0191208_86	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0191208_87	PHROG	phrog_1194	NA	unknown function
UHGV-0191208_87	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-0191208_87	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA