UHGV-0191341

Genome information

Genome length 16,298 bps

CDS count 21

Completeness 71.87% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191341
vOTU ID	vOTU-029979
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594574
BioSample	SAMN09781772
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.94
Jumbo phage	No

Genome content
Genome length	16,298 bps
GC content	39.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	92.68%
Average CDS length	722.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191341_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0191341_7	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0191341_7	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0191341_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0191341_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0191341_9	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0191341_9	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0191341_9	Structural annotation	PF17427	NA	NA
UHGV-0191341_10	Structural annotation	PF05435	NA	NA
UHGV-0191341_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0191341_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0191341_11	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-0191341_11	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0191341_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0191341_11	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0191341_12	PHROG	phrog_199	holin	lysis
UHGV-0191341_12	UniRef90	UniRef90_A0A2N0SXP7	Holin family	NA
UHGV-0191341_12	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0191341_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0191341_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0191341_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0191341_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0191341_13	PHROG	phrog_291	endolysin	lysis
UHGV-0191341_13	UniRef90	UniRef90_A0A174YPM8	Autolytic lysozyme	NA
UHGV-0191341_13	eggNOG-mapper	883114.HMPREF9709_01178	hydrolase family 25	NA
UHGV-0191341_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0191341_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0191341_13	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0191341_15	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0191341_15	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0191341_15	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0191341_15	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0191341_17	PHROG	phrog_2248	tail protein	tail
UHGV-0191341_17	UniRef90	UniRef90_A0A843HLB5	Caud_tail_N domain-containing protein	NA
UHGV-0191341_17	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0191341_17	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0191341_17	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0191341_17	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0191341_18	PHROG	phrog_2038	upper collar connector	connector
UHGV-0191341_18	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0191341_18	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0191341_18	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0191341_19	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0191341_19	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0191341_21	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0191341_21	PHROG	phrog_819	tail protein	tail
UHGV-0191341_21	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0191341_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0191341_21	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA