UHGV-0191453

Genome information

Genome length 35,414 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191453
vOTU ID	vOTU-047169
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597979
BioSample	SAMN10407347
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.92
Jumbo phage	No

Genome content
Genome length	35,414 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	94.40%
Average CDS length	563.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191453_1	PHROG	phrog_4433	NA	unknown function
UHGV-0191453_1	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0191453_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0191453_1	Structural annotation	NF007410	NA	NA
UHGV-0191453_2	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0191453_2	UniRef90	UniRef90_UPI0013CFF45C	radical SAM protein	NA
UHGV-0191453_2	eggNOG-mapper	1235798.C817_05514	NA	NA
UHGV-0191453_2	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0191453_3	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191453_3	UniRef90	UniRef90_UPI000977AB4C	transcriptional regulator	NA
UHGV-0191453_3	eggNOG-mapper	397291.C804_06294	transposase activity	NA
UHGV-0191453_3	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0191453_3	Structural annotation	PF17375	NA	NA
UHGV-0191453_5	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0191453_6	Structural annotation	PF06657	NA	NA
UHGV-0191453_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0191453_10	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0191453_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0191453_11	PHROG	phrog_21498	NA	unknown function
UHGV-0191453_11	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0191453_11	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0191453_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0191453_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0191453_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0191453_11	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0191453_13	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0191453_13	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0191453_13	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0191453_13	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0191453_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0191453_14	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0191453_14	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0191453_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0191453_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0191453_15	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0191453_15	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0191453_15	eggNOG-mapper	1235792.C808_05364	Phage minor capsid protein 2	NA
UHGV-0191453_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0191453_15	COG	COG2369	NA	NA
UHGV-0191453_15	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0191453_16	PHROG	phrog_35328	NA	unknown function
UHGV-0191453_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0191453_17	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0191453_17	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-0191453_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0191453_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0191453_18	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0191453_18	Structural annotation	PF06810	NA	NA
UHGV-0191453_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0191453_19	UniRef90	UniRef90_A0A3Q9B9E4	P22 coat protein-protein 5 domain protein	NA
UHGV-0191453_19	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0191453_19	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0191453_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191453_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0191453_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0191453_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0191453_22	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0191453_22	Structural annotation	PF11367	NA	NA
UHGV-0191453_23	PHROG	phrog_885	major tail protein	tail
UHGV-0191453_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0191453_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0191453_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0191453_25	PHROG	phrog_23464	NA	unknown function
UHGV-0191453_25	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0191453_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0191453_25	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0191453_26	PHROG	phrog_36410	NA	unknown function
UHGV-0191453_26	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0191453_26	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0191453_26	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0191453_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0191453_27	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0191453_27	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0191453_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0191453_27	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0191453_28	PHROG	phrog_9534	head protein	head and packaging
UHGV-0191453_28	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0191453_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0191453_30	PHROG	phrog_291	endolysin	lysis
UHGV-0191453_30	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-0191453_30	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0191453_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0191453_30	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0191453_30	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0191453_30	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0191453_31	PHROG	phrog_37604	NA	unknown function
UHGV-0191453_31	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0191453_32	PHROG	phrog_1129	holin	lysis
UHGV-0191453_32	UniRef90	UniRef90_A0A3R8INC9	Enolase	NA
UHGV-0191453_32	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0191453_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0191453_32	Structural annotation	PF06946	NA	NA
UHGV-0191453_34	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0191453_35	PHROG	phrog_3754	NA	unknown function
UHGV-0191453_35	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0191453_36	PHROG	phrog_21718	NA	unknown function
UHGV-0191453_36	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0191453_37	PHROG	phrog_22984	NA	unknown function
UHGV-0191453_38	PHROG	phrog_16490	NA	unknown function
UHGV-0191453_38	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0191453_39	PHROG	phrog_20016	NA	unknown function
UHGV-0191453_39	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0191453_39	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0191453_39	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0191453_40	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0191453_40	Structural annotation	PF12510	NA	NA
UHGV-0191453_41	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0191453_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191453_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0191453_42	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0191453_42	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0191453_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191453_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191453_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191453_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191453_42	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0191453_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0191453_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191453_43	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0191453_44	PHROG	phrog_5610	NA	unknown function
UHGV-0191453_44	eggNOG-mapper	655812.HMPREF0061_0218	NA	NA
UHGV-0191453_44	Pfam	PF16729	NA	DUF5067
UHGV-0191453_44	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0191453_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0191453_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191453_46	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0191453_46	eggNOG-mapper	755731.Clo1100_1415	DNA-binding helix-turn-helix protein	NA
UHGV-0191453_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191453_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191453_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191453_56	UniRef90	UniRef90_A0A1Y3S9B9	YqaJ domain-containing protein	NA
UHGV-0191453_56	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0191453_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0191453_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0191453_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0191453_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0191453_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0191453_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191453_57	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0191453_57	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0191453_57	Pfam	PF03837	RecT family	RecT
UHGV-0191453_57	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0191453_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0191453_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0191453_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0191453_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0191453_58	UniRef90	UniRef90_A0A1C5PRE8	Single-stranded DNA-binding protein	NA
UHGV-0191453_58	eggNOG-mapper	877420.ATVW01000039_gene45	Single-strand binding protein family	NA
UHGV-0191453_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0191453_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0191453_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0191453_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0191453_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0191453_59	PHROG	phrog_16304	NA	unknown function
UHGV-0191453_59	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0191453_59	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0191453_59	Pfam	PF19808	NA	DUF6291
UHGV-0191453_59	Structural annotation	PF19808	NA	NA
UHGV-0191453_60	PHROG	phrog_4433	NA	unknown function
UHGV-0191453_60	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0191453_60	COG	COG5164	Transcription elongation factor SPT5	NA