UHGV-0191456

Genome information

Genome length 39,254 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191456
vOTU ID	vOTU-006343
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597977
BioSample	SAMN10407347
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.37
Jumbo phage	No

Genome content
Genome length	39,254 bps
GC content	51.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.65%
Average CDS length	665.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191456_3	eggNOG-mapper	657322.FPR_23450	NA	NA
UHGV-0191456_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0191456_4	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0191456_4	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0191456_6	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191456_6	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0191456_6	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0191456_6	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0191456_6	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0191456_6	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0191456_7	UniRef90	UniRef90_A0A8D9UHF6	NA	NA
UHGV-0191456_7	eggNOG-mapper	272630.MexAM1_META1p3985	NA	NA
UHGV-0191456_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0191456_8	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0191456_8	UniRef90	UniRef90_A0A8D9UH35	Large subunit terminase	NA
UHGV-0191456_8	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0191456_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0191456_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0191456_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0191456_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0191456_10	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0191456_10	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0191456_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0191456_11	UniRef90	UniRef90_A0A8D9UHD6	Ogr/Delta-like zinc finger	NA
UHGV-0191456_11	Structural annotation	PF20020	NA	NA
UHGV-0191456_12	UniRef90	UniRef90_A0A8D9UHB9	Non-structural protein 5	NA
UHGV-0191456_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0191456_13	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0191456_13	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0191456_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0191456_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191456_14	PHROG	phrog_15239	NA	unknown function
UHGV-0191456_16	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0191456_16	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0191456_16	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0191456_17	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0191456_17	PHROG	phrog_819	tail protein	tail
UHGV-0191456_17	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-0191456_17	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0191456_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0191456_17	COG	COG4675	Phage tail collar domain	NA
UHGV-0191456_18	KOfam	K20285	RABEPK; Rab9 effector protein with kelch motifs	NA
UHGV-0191456_18	eggNOG-mapper	7897.ENSLACP00000008649	proteasomal ubiquitin-independent protein catabolic process	NA
UHGV-0191456_18	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-0191456_18	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0191456_18	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0191456_19	UniRef90	UniRef90_A0A8D9PDI7	mRNA splicing protein	NA
UHGV-0191456_19	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0191456_21	PHROG	phrog_27545	NA	unknown function
UHGV-0191456_21	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0191456_21	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0191456_21	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0191456_22	PHROG	phrog_37604	NA	unknown function
UHGV-0191456_22	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0191456_23	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0191456_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0191456_24	PHROG	phrog_15001	endolysin	lysis
UHGV-0191456_24	UniRef90	UniRef90_A0A8D9UHF0	PGRP protein	NA
UHGV-0191456_24	eggNOG-mapper	411483.FAEPRAA2165_03397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191456_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0191456_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191456_24	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0191456_25	Structural annotation	MF_01304	NA	NA
UHGV-0191456_26	PHROG	phrog_30118	NA	unknown function
UHGV-0191456_26	UniRef90	UniRef90_A0A8D9UHE1	PolyVal ADP-ribosyltransferase	NA
UHGV-0191456_26	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0191456_26	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0191456_26	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0191456_27	KOfam	K14059	int; integrase	NA
UHGV-0191456_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0191456_27	UniRef90	UniRef90_A0A8D9PE11	Integrase	NA
UHGV-0191456_27	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0191456_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0191456_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0191456_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0191456_28	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0191456_28	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0191456_28	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0191456_29	UniRef90	UniRef90_A0A8D9PDX9	Histone H3.3 finger-like protein	NA
UHGV-0191456_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191456_30	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0191456_30	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0191456_30	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0191456_31	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-0191456_31	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0191456_34	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0191456_35	Structural annotation	NF041588	NA	NA
UHGV-0191456_39	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191456_39	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0191456_39	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0191456_39	Pfam	PF06378	NA	DUF1071
UHGV-0191456_39	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0191456_40	PHROG	phrog_1389	NA	unknown function
UHGV-0191456_40	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0191456_40	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0191456_41	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191456_41	UniRef90	UniRef90_A0A2T3EXE0	HNHc domain-containing protein	NA
UHGV-0191456_41	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0191456_41	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0191456_41	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0191456_41	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0191456_42	PHROG	phrog_7566	NA	unknown function
UHGV-0191456_42	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0191456_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0191456_43	UniRef90	UniRef90_A0A6M3KVJ7	Putative methyltransferase	NA
UHGV-0191456_43	eggNOG-mapper	1291050.JAGE01000001_gene2906	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0191456_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0191456_43	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0191456_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0191456_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0191456_44	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0191456_44	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0191456_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0191456_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0191456_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0191456_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0191456_44	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0191456_45	PHROG	phrog_16304	NA	unknown function
UHGV-0191456_45	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0191456_45	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0191456_45	Pfam	PF19808	NA	DUF6291
UHGV-0191456_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0191456_45	Structural annotation	PF19808	NA	NA
UHGV-0191456_46	PHROG	phrog_9804	NA	unknown function
UHGV-0191456_46	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0191456_46	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0191456_46	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0191456_46	Structural annotation	PF11417	NA	NA
UHGV-0191456_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0191456_47	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0191456_47	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0191456_47	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0191456_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0191456_47	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0191456_49	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191456_49	eggNOG-mapper	1519439.JPJG01000013_gene206	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0191456_49	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191456_49	Structural annotation	TIGR04381	NA	NA
UHGV-0191456_56	PHROG	phrog_3777	NA	unknown function
UHGV-0191456_56	UniRef90	UniRef90_A0A417F883	NA	NA
UHGV-0191456_56	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0191456_56	Pfam	PF12957	NA	DUF3846
UHGV-0191456_56	Structural annotation	PF12957	NA	NA
UHGV-0191456_57	PHROG	phrog_38832	NA	unknown function
UHGV-0191456_57	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0191456_57	Structural annotation	PF18300, MF_01549, NF007981	NA	NA