UHGV-0191514

Genome information

Genome length 37,456 bps

CDS count 45

Completeness 89.25% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191514
vOTU ID	vOTU-029993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593895
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.06
Jumbo phage	No

Genome content
Genome length	37,456 bps
GC content	53.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.74%
Average CDS length	799.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191514_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191514_1	UniRef90	UniRef90_A0A1C6CNV0	Helix-turn-helix domain	NA
UHGV-0191514_1	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0191514_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191514_1	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0191514_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191514_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0191514_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0191514_2	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0191514_4	UniRef90	UniRef90_UPI0003C0D8C8	helix-turn-helix transcriptional regulator	NA
UHGV-0191514_4	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0191514_5	PHROG	phrog_5079	NA	unknown function
UHGV-0191514_5	eggNOG-mapper	1341157.RF007C_05240	NA	NA
UHGV-0191514_6	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0191514_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0191514_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191514_9	UniRef90	UniRef90_UPI001BB47349	YqaJ viral recombinase family protein	NA
UHGV-0191514_9	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0191514_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0191514_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0191514_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0191514_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0191514_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0191514_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191514_10	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0191514_10	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0191514_10	Pfam	PF03837	RecT family	RecT
UHGV-0191514_10	NCBIFam	NF007351.0	recombination protein RecT	NA
UHGV-0191514_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0191514_10	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0191514_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0191514_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0191514_11	UniRef90	UniRef90_A0A847C6L7	Single-stranded DNA-binding protein	NA
UHGV-0191514_11	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0191514_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0191514_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0191514_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0191514_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0191514_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0191514_13	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0191514_13	UniRef90	UniRef90_A0A3A9AW20	Phage_rep_org_N domain-containing protein	NA
UHGV-0191514_13	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0191514_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0191514_14	UniRef90	UniRef90_UPI000367164C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0191514_14	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0191514_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0191514_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0191514_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0191514_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0191514_17	UniRef90	UniRef90_UPI001187664F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0191514_17	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0191514_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0191514_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0191514_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0191514_20	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0191514_20	PHROG	phrog_7713	NA	unknown function
UHGV-0191514_20	UniRef90	UniRef90_UPI001A9B9B76	pentapeptide repeat-containing protein	NA
UHGV-0191514_20	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0191514_20	Structural annotation	PF13599, NF000421, COG1357	NA	NA
UHGV-0191514_23	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0191514_23	UniRef90	UniRef90_A0A1C6GCR8	Phage N-6-adenine-methyltransferase	NA
UHGV-0191514_23	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0191514_23	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0191514_23	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0191514_23	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0191514_25	PHROG	phrog_199	holin	lysis
UHGV-0191514_25	UniRef90	UniRef90_UPI00140FD175	phage holin family protein	NA
UHGV-0191514_25	eggNOG-mapper	1232449.BAHV02000008_gene653	Bacteriophage holin family	NA
UHGV-0191514_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0191514_25	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0191514_25	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0191514_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0191514_26	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0191514_26	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0191514_26	UniRef90	UniRef90_A0A2A4G083	M23 family peptidase	NA
UHGV-0191514_26	eggNOG-mapper	1437882.AZRU01000006_gene1595	Peptidase family M23	NA
UHGV-0191514_26	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0191514_26	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0191514_27	PHROG	phrog_6160	NA	unknown function
UHGV-0191514_27	eggNOG-mapper	37105.F8J1D6_9CAUD	NA	NA
UHGV-0191514_28	eggNOG-mapper	1347393.HG726020_gene1345	NA	NA
UHGV-0191514_30	PHROG	phrog_13589	NA	unknown function
UHGV-0191514_30	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0191514_31	PHROG	phrog_31538	NA	unknown function
UHGV-0191514_32	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0191514_33	PHROG	phrog_22978	NA	unknown function
UHGV-0191514_34	KOfam	K19220	cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]	NA
UHGV-0191514_34	UniRef90	UniRef90_A0A1V5RXD7	Putative peptidoglycan binding domain protein	NA
UHGV-0191514_34	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0191514_34	Pfam	PF01476	LysM domain	LysM
UHGV-0191514_34	Structural annotation	PF01476, COG1388	NA	NA
UHGV-0191514_35	PHROG	phrog_372	tail protein	tail
UHGV-0191514_35	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0191514_35	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0191514_35	Pfam	PF05895	NA	DUF859
UHGV-0191514_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0191514_35	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0191514_36	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0191514_36	COG	COG4926	Phage-related protein	NA
UHGV-0191514_36	Structural annotation	NF038340	NA	NA
UHGV-0191514_37	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0191514_37	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0191514_37	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0191514_38	PHROG	phrog_12105	NA	unknown function
UHGV-0191514_38	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0191514_39	PHROG	phrog_15239	NA	unknown function
UHGV-0191514_40	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0191514_40	UniRef90	UniRef90_A0A844DTU7	N4-gp56 family major capsid protein	NA
UHGV-0191514_40	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0191514_40	Pfam	PF13252	NA	DUF4043
UHGV-0191514_40	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0191514_40	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191514_41	PHROG	phrog_13908	NA	unknown function
UHGV-0191514_41	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0191514_42	KOfam	K07584	NA	NA
UHGV-0191514_42	PHROG	phrog_4478	peptidase	other
UHGV-0191514_42	UniRef90	UniRef90_A0A3R6MZF6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0191514_42	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0191514_42	COG	COG2868	NA	NA
UHGV-0191514_42	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0191514_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0191514_43	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0191514_43	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0191514_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0191514_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0191514_44	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0191514_44	UniRef90	UniRef90_UPI0010311CEE	phage terminase large subunit	NA
UHGV-0191514_44	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0191514_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0191514_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0191514_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA