UHGV-0191520

Genome information

Genome length 30,262 bps

CDS count 46

Completeness 78.94% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191520
vOTU ID	vOTU-022966
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737760_a1_ct24390_vs1@Myoviridae__sp._ct3OA1
BioSample	SAMEA2737760
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.14
Jumbo phage	No

Genome content
Genome length	30,262 bps
GC content	42.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.63%
Average CDS length	619.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191520_1	PHROG	phrog_7566	NA	unknown function
UHGV-0191520_1	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0191520_1	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0191520_2	PHROG	phrog_8470	NA	unknown function
UHGV-0191520_2	UniRef90	UniRef90_UPI001C10724F	PcfJ domain-containing protein	NA
UHGV-0191520_2	eggNOG-mapper	411459.RUMOBE_00950	PcfJ-like protein	NA
UHGV-0191520_2	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0191520_2	Structural annotation	PF14284	NA	NA
UHGV-0191520_3	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0191520_3	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0191520_4	COG	COG0328	Ribonuclease HI	NA
UHGV-0191520_4	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0191520_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0191520_5	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0191520_5	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0191520_8	PHROG	phrog_11237	NA	unknown function
UHGV-0191520_8	eggNOG-mapper	478749.BRYFOR_08581	NA	NA
UHGV-0191520_9	Structural annotation	PF20037	NA	NA
UHGV-0191520_10	PHROG	phrog_874	NA	unknown function
UHGV-0191520_10	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0191520_10	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0191520_10	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0191520_11	PHROG	phrog_585	NA	unknown function
UHGV-0191520_11	UniRef90	UniRef90_A0A7G5MSN3	NA	NA
UHGV-0191520_11	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0191520_11	Pfam	PF10711	NA	DUF2513
UHGV-0191520_11	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0191520_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0191520_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191520_18	UniRef90	UniRef90_N1ZZY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0191520_18	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0191520_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191520_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191520_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0191520_20	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0191520_20	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0191520_20	UniRef90	UniRef90_A0A1M6B7T2	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0191520_20	eggNOG-mapper	410358.Mlab_0037	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0191520_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191520_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0191520_21	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0191520_23	PHROG	phrog_1220	head protein	head and packaging
UHGV-0191520_23	eggNOG-mapper	1145276.T479_19910	NA	NA
UHGV-0191520_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0191520_24	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0191520_24	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0191520_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0191520_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0191520_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0191520_25	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0191520_25	eggNOG-mapper	428125.CLOLEP_01423	Phage tail protein	NA
UHGV-0191520_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0191520_25	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0191520_26	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0191520_26	PHROG	phrog_5218	NA	unknown function
UHGV-0191520_26	UniRef90	UniRef90_A0A415G8B3	PhageMin_Tail domain-containing protein	NA
UHGV-0191520_26	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0191520_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0191520_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0191520_26	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0191520_28	PHROG	phrog_88	major tail protein	tail
UHGV-0191520_28	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0191520_28	eggNOG-mapper	1120971.AUCA01000066_gene599	Phage tail tube protein	NA
UHGV-0191520_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0191520_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0191520_29	Structural annotation	PF05657	NA	NA
UHGV-0191520_30	Structural annotation	TIGR01725	NA	NA
UHGV-0191520_31	UniRef90	UniRef90_R5WDX4	Putative phage head-tail adaptor	NA
UHGV-0191520_31	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0191520_31	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0191520_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0191520_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0191520_32	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0191520_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0191520_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0191520_33	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0191520_33	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0191520_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0191520_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0191520_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0191520_33	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0191520_34	KOfam	K06904	NA	NA
UHGV-0191520_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0191520_34	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0191520_34	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0191520_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0191520_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0191520_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0191520_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0191520_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0191520_35	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-0191520_35	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0191520_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0191520_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0191520_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0191520_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0191520_36	UniRef90	UniRef90_R7A0H4	Terminase	NA
UHGV-0191520_36	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0191520_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0191520_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0191520_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0191520_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0191520_39	KOfam	K10062	COLEC12; collectin sub-family member 12	NA
UHGV-0191520_39	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0191520_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0191520_40	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0191520_40	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0191520_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0191520_41	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0191520_41	UniRef90	UniRef90_A0A417W8X1	HNH endonuclease	NA
UHGV-0191520_41	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0191520_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0191520_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0191520_41	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0191520_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0191520_42	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0191520_42	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0191520_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0191520_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0191520_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0191520_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0191520_43	PHROG	phrog_435	endolysin	lysis
UHGV-0191520_43	UniRef90	UniRef90_A0A6L5Y0L2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191520_43	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0191520_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0191520_43	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0191520_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191520_43	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0191520_44	PHROG	phrog_1863	NA	unknown function
UHGV-0191520_44	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0191520_45	PHROG	phrog_881	holin	lysis
UHGV-0191520_45	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0191520_45	eggNOG-mapper	1095750.HMPREF9970_2289	Putative phage holin Dp-1	NA
UHGV-0191520_45	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0191520_45	Structural annotation	PF16938	NA	NA