UHGV-0191631

Genome information

Genome length 28,677 bps

CDS count 48

Completeness 79.08% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191631
vOTU ID	vOTU-018482
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737769_a1_ct5192_vs1@Siphoviridae__sp._ctmTb1
BioSample	SAMEA2737769
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.07
Jumbo phage	No

Genome content
Genome length	28,677 bps
GC content	28.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.64%
Average CDS length	543.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191631_1	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-0191631_1	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0191631_2	PHROG	phrog_98	NA	unknown function
UHGV-0191631_2	UniRef90	UniRef90_A0A5P8M744	YopX domain-containing protein	NA
UHGV-0191631_2	eggNOG-mapper	1220589.CD32_00505	YopX protein	NA
UHGV-0191631_2	Pfam	PF09643	YopX protein	YopX
UHGV-0191631_2	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0191631_2	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0191631_3	Structural annotation	PF18337, MF_00754, TIGR00739, COG1862	NA	NA
UHGV-0191631_5	PHROG	phrog_24552	NA	unknown function
UHGV-0191631_6	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0191631_6	eggNOG-mapper	1145276.T479_16305	NA	NA
UHGV-0191631_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0191631_13	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0191631_17	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0191631_17	UniRef90	UniRef90_UPI001A32985E	transposase	NA
UHGV-0191631_17	eggNOG-mapper	1262449.CP6013_3189	transposase activity	NA
UHGV-0191631_17	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0191631_17	Structural annotation	PF07141	NA	NA
UHGV-0191631_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0191631_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0191631_18	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0191631_18	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0191631_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0191631_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0191631_18	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0191631_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0191631_19	UniRef90	UniRef90_UPI000F520C24	phage portal protein	NA
UHGV-0191631_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0191631_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0191631_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0191631_20	UniRef90	UniRef90_R5YW81	Minor capsid 2 protein	NA
UHGV-0191631_20	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0191631_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0191631_20	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0191631_20	COG	COG2369	NA	NA
UHGV-0191631_20	Structural annotation	PF06152, PF18451	NA	NA
UHGV-0191631_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0191631_21	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0191631_21	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0191631_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0191631_21	Structural annotation	PF06810	NA	NA
UHGV-0191631_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0191631_22	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0191631_22	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0191631_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0191631_23	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0191631_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0191631_25	Pfam	PF20536	NA	DUF6751
UHGV-0191631_25	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0191631_26	UniRef90	UniRef90_R5YSS3	Minor capsid	NA
UHGV-0191631_26	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0191631_26	Pfam	PF02783	Methyl-coenzyme M reductase beta subunit, N-terminal domain	MCR_beta_N
UHGV-0191631_26	Structural annotation	PF11114	NA	NA
UHGV-0191631_27	PHROG	phrog_3266	tail completion	connector
UHGV-0191631_27	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0191631_27	Structural annotation	PF12691	NA	NA
UHGV-0191631_28	PHROG	phrog_3099	NA	unknown function
UHGV-0191631_28	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0191631_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0191631_30	PHROG	phrog_706	NA	unknown function
UHGV-0191631_30	UniRef90	UniRef90_R5ZNB7	Putative phage gp15 protein	NA
UHGV-0191631_30	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0191631_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0191631_30	Structural annotation	PF06854	NA	NA
UHGV-0191631_32	PHROG	phrog_35723	NA	unknown function
UHGV-0191631_32	UniRef90	UniRef90_R7BP57	Tape measure domain protein	NA
UHGV-0191631_32	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0191631_32	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0191631_32	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0191631_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0191631_33	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0191631_35	eggNOG-mapper	693746.OBV_41420	NA	NA
UHGV-0191631_36	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0191631_36	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0191631_36	eggNOG-mapper	619693.HMPREF6745_2540	domain, Protein	NA
UHGV-0191631_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0191631_36	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0191631_37	eggNOG-mapper	1280671.AUJH01000002_gene1605	protein involved in cytokinesis, contains TGc (transglutaminase protease-like) domain	NA
UHGV-0191631_37	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0191631_37	Structural annotation	PF02973	NA	NA
UHGV-0191631_39	PHROG	phrog_4105	NA	unknown function
UHGV-0191631_39	eggNOG-mapper	1336234.JAGN01000004_gene511	NA	NA
UHGV-0191631_40	PHROG	phrog_443	holin	lysis
UHGV-0191631_40	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-0191631_40	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0191631_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0191631_40	Structural annotation	PF16945	NA	NA
UHGV-0191631_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0191631_41	PHROG	phrog_9611	endolysin	lysis
UHGV-0191631_41	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0191631_41	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0191631_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0191631_41	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0191631_41	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0191631_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191631_42	UniRef90	UniRef90_UPI000BFD3BF6	NUMOD4 domain-containing protein	NA
UHGV-0191631_42	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0191631_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0191631_42	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0191631_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0191631_42	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0191631_42	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0191631_44	KOfam	K07063	NA	NA
UHGV-0191631_44	UniRef90	UniRef90_A0A3D1PJK3	Putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0191631_44	eggNOG-mapper	273068.TTE2037	PIN domain	NA
UHGV-0191631_44	Pfam	PF13470	PIN domain	PIN_3
UHGV-0191631_44	NCBIFam	TIGR00305.1	putative toxin-antitoxin system toxin component, PIN family	NA
UHGV-0191631_44	COG	COG1569	Predicted nucleic acid-binding protein, contains PIN domain	NA
UHGV-0191631_44	Structural annotation	PF13470, MF_00265, TIGR00305, COG1569	NA	NA
UHGV-0191631_47	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0191631_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0191631_47	UniRef90	UniRef90_R6Z152	DNA-binding protein	NA
UHGV-0191631_47	eggNOG-mapper	2055.JNXA01000008_gene1457	sequence-specific DNA binding	NA
UHGV-0191631_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0191631_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191631_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191631_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0191631_48	AcrCatalog	cluster_94195	NA	NA