UHGV-0191635

Genome information

Genome length 35,427 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191635
vOTU ID	vOTU-005936
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597308
BioSample	SAMN09781764
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.42
Jumbo phage	No

Genome content
Genome length	35,427 bps
GC content	49.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.10%
Average CDS length	512.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191635_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191635_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0191635_1	UniRef90	UniRef90_UPI001F0A6EFA	recombinase family protein	NA
UHGV-0191635_1	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0191635_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191635_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191635_2	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0191635_2	eggNOG-mapper	663278.Ethha_2212	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0191635_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191635_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0191635_2	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0191635_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0191635_4	UniRef90	UniRef90_A0A417GG38	XRE family transcriptional regulator	NA
UHGV-0191635_4	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0191635_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191635_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0191635_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0191635_9	UniRef90	UniRef90_A0A5F0K262	XRE family transcriptional regulator	NA
UHGV-0191635_9	eggNOG-mapper	938278.CAJO01000051_gene818	DNA-binding helix-turn-helix protein	NA
UHGV-0191635_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191635_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191635_10	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0191635_10	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0191635_10	UniRef90	UniRef90_A0A2J4JRR8	Phage regulatory protein/antirepressor Ant	NA
UHGV-0191635_10	eggNOG-mapper	941770.GL622178_gene366	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0191635_10	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0191635_10	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0191635_10	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0191635_10	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0191635_10	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0191635_16	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0191635_16	UniRef90	UniRef90_A0A372V642	Adenine methyltransferase	NA
UHGV-0191635_16	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0191635_16	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0191635_16	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0191635_16	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0191635_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191635_17	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0191635_17	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0191635_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0191635_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0191635_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0191635_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0191635_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0191635_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191635_18	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0191635_18	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0191635_18	Pfam	PF03837	RecT family	RecT
UHGV-0191635_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0191635_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0191635_18	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0191635_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0191635_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0191635_19	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-0191635_19	eggNOG-mapper	633697.EubceDRAFT1_2148	Single-stranded DNA-binding protein	NA
UHGV-0191635_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0191635_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0191635_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0191635_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0191635_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0191635_20	PHROG	phrog_15946	NA	unknown function
UHGV-0191635_20	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0191635_21	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0191635_22	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0191635_22	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0191635_22	eggNOG-mapper	469604.HMPREF0946_01097	NA	NA
UHGV-0191635_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0191635_23	PHROG	phrog_236	nucleotide kinase	other
UHGV-0191635_23	UniRef90	UniRef90_A0A417W9V0	NA	NA
UHGV-0191635_23	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0191635_23	Pfam	PF11753	NA	DUF3310
UHGV-0191635_23	Structural annotation	PF11753	NA	NA
UHGV-0191635_24	PHROG	phrog_4973	NA	unknown function
UHGV-0191635_24	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0191635_24	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0191635_24	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0191635_25	PHROG	phrog_1163	NA	unknown function
UHGV-0191635_25	UniRef90	UniRef90_A0A1Q9PJH9	Replication protein	NA
UHGV-0191635_25	eggNOG-mapper	1122947.FR7_2509	Transcriptional regulator	NA
UHGV-0191635_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0191635_25	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0191635_25	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0191635_25	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0191635_25	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0191635_26	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0191635_26	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0191635_26	UniRef90	UniRef90_UPI001AA0C12C	ATP-binding protein	NA
UHGV-0191635_26	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0191635_26	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0191635_26	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0191635_26	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0191635_29	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0191635_29	PHROG	phrog_11371	NA	unknown function
UHGV-0191635_29	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0191635_29	eggNOG-mapper	742738.HMPREF9460_01134	Type II restriction enzyme, methylase subunits	NA
UHGV-0191635_29	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0191635_29	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0191635_30	PHROG	phrog_7713	NA	unknown function
UHGV-0191635_30	UniRef90	UniRef90_UPI001A9B9B76	pentapeptide repeat-containing protein	NA
UHGV-0191635_30	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0191635_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0191635_31	UniRef90	UniRef90_U7UBY9	PF07374 family protein	NA
UHGV-0191635_31	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0191635_31	Pfam	PF07374	NA	DUF1492
UHGV-0191635_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0191635_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0191635_32	UniRef90	UniRef90_UPI001C10BD17	terminase small subunit	NA
UHGV-0191635_32	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0191635_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0191635_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0191635_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0191635_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0191635_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0191635_33	UniRef90	UniRef90_UPI001C107040	PBSX family phage terminase large subunit	NA
UHGV-0191635_33	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0191635_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0191635_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0191635_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0191635_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0191635_33	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0191635_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0191635_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0191635_34	UniRef90	UniRef90_UPI0013D2C958	phage portal protein	NA
UHGV-0191635_34	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0191635_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0191635_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0191635_35	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0191635_35	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0191635_35	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0191635_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0191635_35	COG	COG2369	NA	NA
UHGV-0191635_37	PHROG	phrog_443	holin	lysis
UHGV-0191635_37	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0191635_37	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-0191635_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0191635_37	Structural annotation	PF16945	NA	NA
UHGV-0191635_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0191635_38	PHROG	phrog_291	endolysin	lysis
UHGV-0191635_38	UniRef90	UniRef90_UPI00195CDDFF	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0191635_38	eggNOG-mapper	1384066.JAGT01000001_gene920	hydrolase, family 25	NA
UHGV-0191635_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0191635_38	COG	COG3108	NA	NA
UHGV-0191635_38	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0191635_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0191635_39	UniRef90	UniRef90_A0A1G5G2N8	Phage minor structural protein GP20	NA
UHGV-0191635_39	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0191635_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0191635_39	Structural annotation	PF06810	NA	NA
UHGV-0191635_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0191635_40	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0191635_40	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0191635_40	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0191635_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191635_41	PHROG	phrog_1236	head protein	head and packaging
UHGV-0191635_41	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0191635_41	Structural annotation	PF05135	NA	NA
UHGV-0191635_42	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0191635_42	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0191635_42	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0191635_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0191635_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0191635_43	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0191635_43	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0191635_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0191635_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0191635_44	PHROG	phrog_957	head protein	head and packaging
UHGV-0191635_44	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0191635_44	Structural annotation	PF12691	NA	NA
UHGV-0191635_45	PHROG	phrog_885	major tail protein	tail
UHGV-0191635_45	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0191635_45	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0191635_46	PHROG	phrog_1021	NA	unknown function
UHGV-0191635_46	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0191635_47	UniRef90	UniRef90_A0A0D0RHE1	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0191635_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0191635_48	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0191635_48	COG	COG1511	NA	NA
UHGV-0191635_48	Structural annotation	MF_04138	NA	NA
UHGV-0191635_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0191635_49	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0191635_49	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0191635_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0191635_50	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0191635_50	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0191635_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0191635_50	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0191635_51	PHROG	phrog_9994	NA	unknown function
UHGV-0191635_51	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0191635_51	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0191635_51	Structural annotation	PF20747	NA	NA
UHGV-0191635_53	Structural annotation	PF11514	NA	NA
UHGV-0191635_54	PHROG	phrog_4105	NA	unknown function
UHGV-0191635_54	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0191635_55	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0191635_55	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0191635_55	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0191635_58	Pfam	PF08681	NA	DUF1778
UHGV-0191635_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191635_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0191635_62	UniRef90	UniRef90_UPI00164C16B2	recombinase family protein	NA
UHGV-0191635_62	eggNOG-mapper	394503.Ccel_3078	Resolvase, N terminal domain	NA
UHGV-0191635_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191635_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191635_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191635_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191635_62	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA