UHGV-0191808

Genome information

Genome length 39,021 bps

CDS count 54

Completeness 95.42% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191808
vOTU ID	vOTU-072833
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595327
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.32
Jumbo phage	No

Genome content
Genome length	39,021 bps
GC content	37.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.29%
Average CDS length	647.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191808_1	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0191808_1	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0191808_1	UniRef90	UniRef90_A0A0M3UL51	Helicase	NA
UHGV-0191808_1	eggNOG-mapper	1432658.V5UR18_9CAUD	helicase activity	NA
UHGV-0191808_1	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0191808_1	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0191808_1	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0191808_2	UniRef90	UniRef90_A0A5S9MN89	Endonuclease	NA
UHGV-0191808_2	eggNOG-mapper	1126885.I3VYX6_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0191808_2	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0191808_3	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0191808_3	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0191808_3	UniRef90	UniRef90_A0A7L8ZJY5	DNA primase	NA
UHGV-0191808_3	eggNOG-mapper	1432658.V5USD1_9CAUD	hydrolase activity, acting on acid anhydrides	NA
UHGV-0191808_3	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0191808_3	Pfam	PF19263	NA	DUF5906
UHGV-0191808_3	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0191808_3	Structural annotation	PF05272, PF08706, PF02257, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0191808_9	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191808_9	UniRef90	UniRef90_A0A2A8EUC2	HNHc domain-containing protein	NA
UHGV-0191808_9	eggNOG-mapper	44056.XP_009041542.1	HNH endonuclease	NA
UHGV-0191808_9	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0191808_9	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0191808_9	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0191808_9	Structural annotation	PF07453, TIGR01453	NA	NA
UHGV-0191808_20	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0191808_22	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0191808_22	UniRef90	UniRef90_A0A5S9MM21	DNA replication protein	NA
UHGV-0191808_22	eggNOG-mapper	1445858.A0A060ADS5_9CAUD	Primase C terminal 1 (PriCT-1)	NA
UHGV-0191808_22	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0191808_22	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0191808_22	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0191808_24	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0191808_24	eggNOG-mapper	1161939.A0A067XH04_9CAUD	NA	NA
UHGV-0191808_24	Pfam	PF11753	NA	DUF3310
UHGV-0191808_25	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191808_25	eggNOG-mapper	1345695.CLSA_c30140	NUMOD4 motif	NA
UHGV-0191808_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0191808_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0191808_27	UniRef90	UniRef90_A0A0M4S676	Metallo-beta-lactamase domain protein	NA
UHGV-0191808_27	eggNOG-mapper	1416012.V5UQV5_9CAUD	hydrolase activity	NA
UHGV-0191808_27	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0191808_27	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0191808_28	PHROG	phrog_674	NA	unknown function
UHGV-0191808_28	UniRef90	UniRef90_V5URF5	NA	NA
UHGV-0191808_28	eggNOG-mapper	1445858.A0A060AHG8_9CAUD	NA	NA
UHGV-0191808_28	Pfam	PF07083	NA	DUF1351
UHGV-0191808_28	Structural annotation	PF07083	NA	NA
UHGV-0191808_29	PHROG	phrog_6479	NA	unknown function
UHGV-0191808_29	Structural annotation	PF05037, PF17847, TIGR00638	NA	NA
UHGV-0191808_30	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0191808_30	UniRef90	UniRef90_A0A7L8ZIT6	DNA polymerase	NA
UHGV-0191808_30	eggNOG-mapper	1445858.A0A060ANI6_9CAUD	nucleic acid binding	NA
UHGV-0191808_30	Structural annotation	PF00136, PF05037, MF_04100, NF004420, COG0417	NA	NA
UHGV-0191808_31	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-0191808_31	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-0191808_31	UniRef90	UniRef90_A0A249XVP4	Glutaredoxin-like protein	NA
UHGV-0191808_31	eggNOG-mapper	1423734.JCM14202_3873	Glutaredoxin	NA
UHGV-0191808_31	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-0191808_31	COG	COG0695	Glutaredoxin	NA
UHGV-0191808_31	Structural annotation	PF00462, MF_01132, NF007657, COG0695	NA	NA
UHGV-0191808_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0191808_33	PHROG	phrog_1110	endolysin	lysis
UHGV-0191808_33	UniRef90	UniRef90_A0A7L7SMC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0191808_33	eggNOG-mapper	1260356.D920_03124	Ami_2	NA
UHGV-0191808_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0191808_33	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0191808_33	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0191808_33	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0191808_33	Structural annotation	PF08460, PF01510, PF09629, MF_04111, NF008758, COG5632	NA	NA
UHGV-0191808_35	PHROG	phrog_4105	NA	unknown function
UHGV-0191808_35	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0191808_36	PHROG	phrog_9884	NA	unknown function
UHGV-0191808_36	eggNOG-mapper	565664.EFXG_01764	NA	NA
UHGV-0191808_37	PHROG	phrog_9884	NA	unknown function
UHGV-0191808_37	eggNOG-mapper	565664.EFXG_01764	NA	NA
UHGV-0191808_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0191808_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0191808_38	UniRef90	UniRef90_A0A1L8WAB1	Phage minor structural protein	NA
UHGV-0191808_38	eggNOG-mapper	565664.EFXG_01765	Prophage endopeptidase tail	NA
UHGV-0191808_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0191808_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0191808_38	COG	COG4926	Phage-related protein	NA
UHGV-0191808_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0191808_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0191808_39	UniRef90	UniRef90_R8ELD4	Gp13 protein	NA
UHGV-0191808_39	eggNOG-mapper	1540257.JQMW01000004_gene407	tail component	NA
UHGV-0191808_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0191808_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0191808_40	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0191808_40	UniRef90	UniRef90_A0A0F3HL36	Chromosome partition protein Smc	NA
UHGV-0191808_40	eggNOG-mapper	226185.EF_0348	Phage tail tape measure protein	NA
UHGV-0191808_40	COG	COG5412	Phage-related protein	NA
UHGV-0191808_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0191808_41	PHROG	phrog_5802	NA	unknown function
UHGV-0191808_41	eggNOG-mapper	1139219.I569_00239	NA	NA
UHGV-0191808_42	UniRef90	UniRef90_UPI0010F78F52	phage tail protein	NA
UHGV-0191808_42	eggNOG-mapper	768486.EHR_09605	NA	NA
UHGV-0191808_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0191808_43	PHROG	phrog_5509	neck protein	connector
UHGV-0191808_43	eggNOG-mapper	565664.EFXG_01771	NA	NA
UHGV-0191808_43	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0191808_44	PHROG	phrog_5910	NA	unknown function
UHGV-0191808_44	eggNOG-mapper	768486.EHR_09595	NA	NA
UHGV-0191808_45	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0191808_45	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0191808_46	eggNOG-mapper	1139219.I569_00234	NA	NA
UHGV-0191808_47	PHROG	phrog_341	major tail protein	tail
UHGV-0191808_47	UniRef90	UniRef90_V5UR44	Major tail protein	NA
UHGV-0191808_47	eggNOG-mapper	1432658.V5UR44_9CAUD	NA	NA
UHGV-0191808_47	Structural annotation	PF16967	NA	NA
UHGV-0191808_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0191808_48	UniRef90	UniRef90_UPI001A8F5724	phage major capsid protein	NA
UHGV-0191808_48	eggNOG-mapper	1139219.I569_00232	Phage capsid family	NA
UHGV-0191808_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0191808_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0191808_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0191808_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0191808_49	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0191808_49	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0191808_49	UniRef90	UniRef90_A0A7V6Y6F7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0191808_49	eggNOG-mapper	1340434.AXVA01000005_gene4852	Serine dehydrogenase proteinase	NA
UHGV-0191808_49	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0191808_49	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0191808_49	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0191808_50	PHROG	phrog_12	portal protein	head and packaging
UHGV-0191808_50	UniRef90	UniRef90_I6T7N2	Phage portal protein, HK97 family	NA
UHGV-0191808_50	eggNOG-mapper	768486.EHR_09565	Phage portal protein	NA
UHGV-0191808_50	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0191808_50	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0191808_50	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0191808_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0191808_51	UniRef90	UniRef90_UPI0019F0A0F2	terminase large subunit	NA
UHGV-0191808_51	eggNOG-mapper	1307436.PBF_22058	Terminase	NA
UHGV-0191808_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0191808_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0191808_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0191808_51	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0191808_52	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0191808_52	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0191808_53	PHROG	phrog_5942	NA	unknown function
UHGV-0191808_53	eggNOG-mapper	1139219.I569_00227	NA	NA
UHGV-0191808_54	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191808_54	UniRef90	UniRef90_A0A5R9F5Y8	HNH endonuclease	NA
UHGV-0191808_54	eggNOG-mapper	574375.BAGA_00230	HNH endonuclease	NA
UHGV-0191808_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA