UHGV-0191843

Genome information

Genome length 23,339 bps

CDS count 37

Completeness 61.05% (medium-quality)

geNomad score 0.9607

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191843
vOTU ID	vOTU-030016
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596363
BioSample	SAMN09781786
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9607
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.8
Jumbo phage	No

Genome content
Genome length	23,339 bps
GC content	57.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.10%
Average CDS length	591.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191843_3	PHROG	phrog_422	major head protein	head and packaging
UHGV-0191843_3	UniRef90	UniRef90_UPI0018750F33	phage capsid protein	NA
UHGV-0191843_3	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0191843_3	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191843_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0191843_4	eggNOG-mapper	1294142.CINTURNW_1031	NA	NA
UHGV-0191843_5	PHROG	phrog_8710	NA	unknown function
UHGV-0191843_5	eggNOG-mapper	1507.HMPREF0262_01181	NA	NA
UHGV-0191843_5	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0191843_6	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0191843_7	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0191843_7	eggNOG-mapper	1507.HMPREF0262_01183	NA	NA
UHGV-0191843_7	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0191843_8	PHROG	phrog_820	major tail protein	tail
UHGV-0191843_8	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0191843_8	COG	COG5492	NA	NA
UHGV-0191843_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0191843_9	PHROG	phrog_8300	NA	unknown function
UHGV-0191843_9	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-0191843_9	Structural annotation	PF06896	NA	NA
UHGV-0191843_10	PHROG	phrog_8355	NA	unknown function
UHGV-0191843_10	UniRef90	UniRef90_UPI0018A7EA5D	Gp15 family bacteriophage protein	NA
UHGV-0191843_10	eggNOG-mapper	1507.HMPREF0262_01186	NA	NA
UHGV-0191843_10	Structural annotation	PF06854	NA	NA
UHGV-0191843_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0191843_11	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0191843_11	COG	COG1511	NA	NA
UHGV-0191843_12	PHROG	phrog_1194	NA	unknown function
UHGV-0191843_12	eggNOG-mapper	411471.SUBVAR_06933	NA	NA
UHGV-0191843_12	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0191843_15	Structural annotation	PF10651	NA	NA
UHGV-0191843_16	PHROG	phrog_1419	tail protein	tail
UHGV-0191843_16	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0191843_16	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0191843_18	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0191843_18	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0191843_18	UniRef90	UniRef90_A0A3D1PRD1	Peptidase_M23 domain-containing protein	NA
UHGV-0191843_18	eggNOG-mapper	1382304.JNIL01000001_gene2694	G5	NA
UHGV-0191843_18	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0191843_18	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0191843_18	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0191843_19	PHROG	phrog_1863	NA	unknown function
UHGV-0191843_19	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0191843_20	PHROG	phrog_1129	holin	lysis
UHGV-0191843_20	UniRef90	UniRef90_A0A367FT42	Enolase	NA
UHGV-0191843_20	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0191843_20	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0191843_20	Structural annotation	PF06946	NA	NA
UHGV-0191843_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191843_21	PHROG	phrog_95	integrase	integration and excision
UHGV-0191843_21	UniRef90	UniRef90_UPI001D0F283A	recombinase family protein	NA
UHGV-0191843_21	eggNOG-mapper	718252.FP2_01160	Resolvase, N terminal domain	NA
UHGV-0191843_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191843_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191843_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191843_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191843_21	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0191843_22	PHROG	phrog_6988	NA	unknown function
UHGV-0191843_22	UniRef90	UniRef90_A0A6N7TNH0	NA	NA
UHGV-0191843_22	eggNOG-mapper	445974.CLORAM_02972	NA	NA
UHGV-0191843_22	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-0191843_22	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0191843_22	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0191843_23	PHROG	phrog_419	NA	unknown function
UHGV-0191843_23	UniRef90	UniRef90_UPI001CBFD05B	PGDYG domain-containing protein	NA
UHGV-0191843_23	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0191843_23	Structural annotation	PF14083	NA	NA
UHGV-0191843_24	PHROG	phrog_7395	NA	unknown function
UHGV-0191843_24	UniRef90	UniRef90_A0A6N7TQQ3	NA	NA
UHGV-0191843_24	eggNOG-mapper	886882.PPSC2_c2958	NA	NA
UHGV-0191843_24	Pfam	PF14015	NA	DUF4231
UHGV-0191843_24	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0191843_25	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0191843_25	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0191843_25	UniRef90	UniRef90_A0A3A6JY26	NA	NA
UHGV-0191843_25	eggNOG-mapper	411471.SUBVAR_05502	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0191843_25	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0191843_25	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0191843_25	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0191843_25	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0191843_25	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0191843_26	PHROG	phrog_87	metallo-protease	other
UHGV-0191843_26	UniRef90	UniRef90_UPI001C3AA0FC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0191843_26	eggNOG-mapper	663278.Ethha_2376	NA	NA
UHGV-0191843_26	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0191843_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0191843_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191843_27	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0191843_27	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0191843_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191843_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191843_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0191843_28	UniRef90	UniRef90_A0A1C5ZI76	HTH cro/C1-type domain-containing protein	NA
UHGV-0191843_28	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0191843_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0191843_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0191843_33	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0191843_33	Structural annotation	PF12957	NA	NA
UHGV-0191843_35	PHROG	phrog_1733	NA	unknown function
UHGV-0191843_35	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-0191843_35	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0191843_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0191843_35	Structural annotation	PF03677	NA	NA
UHGV-0191843_36	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0191843_36	PHROG	phrog_1499	NA	unknown function
UHGV-0191843_36	UniRef90	UniRef90_A0A367GHQ5	Chromosome segregation protein SMC	NA
UHGV-0191843_36	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-0191843_36	Pfam	PF13476	AAA domain	AAA_23
UHGV-0191843_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0191843_36	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0191843_37	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191843_37	UniRef90	UniRef90_UPI00122C2B12	ATP-binding protein	NA
UHGV-0191843_37	eggNOG-mapper	608534.GCWU000341_02312	AAA domain	NA
UHGV-0191843_37	Pfam	PF13479	AAA domain	AAA_24
UHGV-0191843_37	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA