UHGV-0191863

Genome information

Genome length 30,167 bps

CDS count 52

Completeness 81.28% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191863
vOTU ID	vOTU-030018
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597777
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.37
Jumbo phage	No

Genome content
Genome length	30,167 bps
GC content	55.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.41%
Average CDS length	559.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191863_1	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0191863_1	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0191863_1	UniRef90	UniRef90_A0A2A7B7W4	ATP-binding protein (Fragment)	NA
UHGV-0191863_1	eggNOG-mapper	411483.FAEPRAA2165_00602	IstB-like ATP binding protein	NA
UHGV-0191863_1	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0191863_1	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0191863_2	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0191863_4	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0191863_4	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0191863_4	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0191863_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0191863_4	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0191863_5	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0191863_5	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0191863_5	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0191863_5	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0191863_5	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0191863_6	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191863_6	UniRef90	UniRef90_UPI000FF8D02D	AP2 domain-containing protein	NA
UHGV-0191863_6	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0191863_6	Structural annotation	PF17375	NA	NA
UHGV-0191863_11	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0191863_11	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0191863_11	Pfam	PF04448	NA	DUF551
UHGV-0191863_11	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0191863_12	PHROG	phrog_21034	NA	unknown function
UHGV-0191863_12	eggNOG-mapper	1286093.C266_13934	NA	NA
UHGV-0191863_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0191863_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0191863_17	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0191863_17	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0191863_17	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0191863_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0191863_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0191863_17	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0191863_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0191863_20	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0191863_20	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0191863_20	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0191863_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0191863_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0191863_21	UniRef90	UniRef90_A0A1I5G7W6	Phage terminase small subunit	NA
UHGV-0191863_21	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0191863_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0191863_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0191863_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0191863_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0191863_22	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0191863_22	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0191863_22	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0191863_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0191863_23	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0191863_23	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0191863_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0191863_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0191863_24	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0191863_24	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0191863_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0191863_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0191863_24	COG	COG2369	NA	NA
UHGV-0191863_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0191863_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0191863_26	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0191863_26	eggNOG-mapper	683837.lse_1605	NA	NA
UHGV-0191863_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0191863_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0191863_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0191863_27	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0191863_27	Structural annotation	PF06810	NA	NA
UHGV-0191863_28	PHROG	phrog_267	major head protein	head and packaging
UHGV-0191863_28	UniRef90	UniRef90_F8UBB7	p22 coat protein	NA
UHGV-0191863_28	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0191863_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0191863_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0191863_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0191863_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0191863_31	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0191863_31	Structural annotation	PF11367	NA	NA
UHGV-0191863_32	PHROG	phrog_885	major tail protein	tail
UHGV-0191863_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0191863_32	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0191863_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0191863_34	PHROG	phrog_23464	NA	unknown function
UHGV-0191863_34	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0191863_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0191863_34	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0191863_35	PHROG	phrog_36410	NA	unknown function
UHGV-0191863_35	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0191863_35	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0191863_35	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0191863_36	PHROG	phrog_538	minor tail protein	tail
UHGV-0191863_36	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0191863_36	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0191863_36	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0191863_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0191863_37	PHROG	phrog_9534	head protein	head and packaging
UHGV-0191863_37	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0191863_37	Structural annotation	PF18463, PF20747	NA	NA
UHGV-0191863_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0191863_39	PHROG	phrog_291	endolysin	lysis
UHGV-0191863_39	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0191863_39	eggNOG-mapper	1125712.HMPREF1316_2132	CW_7 repeat	NA
UHGV-0191863_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0191863_39	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0191863_39	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0191863_39	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0191863_40	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0191863_41	PHROG	phrog_1129	holin	lysis
UHGV-0191863_41	UniRef90	UniRef90_A0A3D4QXE9	Enolase	NA
UHGV-0191863_41	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0191863_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0191863_41	Structural annotation	PF06946	NA	NA
UHGV-0191863_43	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0191863_44	PHROG	phrog_3754	NA	unknown function
UHGV-0191863_44	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0191863_45	PHROG	phrog_21718	NA	unknown function
UHGV-0191863_45	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0191863_46	PHROG	phrog_22984	NA	unknown function
UHGV-0191863_47	PHROG	phrog_16490	NA	unknown function
UHGV-0191863_47	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0191863_48	PHROG	phrog_20016	NA	unknown function
UHGV-0191863_48	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0191863_48	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0191863_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0191863_49	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0191863_49	Structural annotation	PF12510	NA	NA
UHGV-0191863_50	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0191863_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191863_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0191863_51	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-0191863_51	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0191863_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191863_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191863_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191863_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191863_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0191863_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0191863_52	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA