UHGV-0191924

Genome information

Genome length 46,039 bps

CDS count 59

Completeness 88.36% (medium-quality)

geNomad score 0.9614

Prediction confidence Confident

Genome information
Genome ID	UHGV-0191924
vOTU ID	vOTU-030020
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594175
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9614
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.31
Jumbo phage	No

Genome content
Genome length	46,039 bps
GC content	45.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.17%
Average CDS length	733.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0191924_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0191924_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0191924_1	UniRef90	UniRef90_A0A847XAL8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0191924_1	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0191924_1	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0191924_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0191924_1	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0191924_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0191924_1	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0191924_2	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0191924_2	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0191924_2	UniRef90	UniRef90_C4Z5Z5	Site-specific DNA-methyltransferase (Adenine-specific)	NA
UHGV-0191924_2	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0191924_2	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0191924_2	Pfam	PF05063	MT-A70	MT-A70
UHGV-0191924_2	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0191924_2	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0191924_3	PHROG	phrog_3136	NA	unknown function
UHGV-0191924_3	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0191924_3	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0191924_5	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0191924_5	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0191924_5	Structural annotation	PF11132	NA	NA
UHGV-0191924_7	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0191924_7	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0191924_7	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0191924_7	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0191924_7	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0191924_7	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0191924_7	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0191924_8	PHROG	phrog_37900	NA	unknown function
UHGV-0191924_8	UniRef90	UniRef90_UPI000A03DFD3	zinc ribbon domain-containing protein	NA
UHGV-0191924_8	eggNOG-mapper	1121866.AUGK01000014_gene2125	serine threonine protein kinase	NA
UHGV-0191924_8	Pfam	PF19789	NA	DUF6273
UHGV-0191924_8	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0191924_8	Structural annotation	PF19789	NA	NA
UHGV-0191924_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191924_14	PHROG	phrog_2546	NA	unknown function
UHGV-0191924_14	eggNOG-mapper	1280692.AUJL01000025_gene2073	PFAM Mo-dependent nitrogenase	NA
UHGV-0191924_14	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0191924_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0191924_15	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0191924_15	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0191924_15	COG	COG5410	NA	NA
UHGV-0191924_15	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0191924_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0191924_16	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0191924_16	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0191924_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0191924_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0191924_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-0191924_18	UniRef90	UniRef90_A0A0A7RTH8	Coat protein	NA
UHGV-0191924_18	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0191924_18	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0191924_18	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0191924_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0191924_19	UniRef90	UniRef90_UPI000F546010	phage head-tail connector protein	NA
UHGV-0191924_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0191924_21	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0191924_21	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0191924_22	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0191924_23	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0191924_23	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0191924_26	PHROG	phrog_28918	NA	unknown function
UHGV-0191924_26	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0191924_26	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0191924_27	UniRef90	UniRef90_A0A7Y3JI01	Flg_new_2 domain-containing protein	NA
UHGV-0191924_27	eggNOG-mapper	1042156.CXIVA_19100	domain, Protein	NA
UHGV-0191924_27	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0191924_27	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0191924_27	COG	COG5492	NA	NA
UHGV-0191924_28	PHROG	phrog_13879	NA	unknown function
UHGV-0191924_32	PHROG	phrog_240	head protein	head and packaging
UHGV-0191924_32	UniRef90	UniRef90_A0A1Y0T1T3	Putative minor tail protein	NA
UHGV-0191924_32	eggNOG-mapper	348824.LPU83_1713	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0191924_32	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0191924_34	Structural annotation	PF16640, NF033510, COG4549	NA	NA
UHGV-0191924_37	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0191924_37	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0191924_37	Pfam	PF19789	NA	DUF6273
UHGV-0191924_37	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0191924_37	Structural annotation	PF19789, PF13306, PF18998	NA	NA
UHGV-0191924_38	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0191924_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0191924_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0191924_39	UniRef90	UniRef90_R6GXU6	Reverse transcriptase domain-containing protein	NA
UHGV-0191924_39	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0191924_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0191924_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0191924_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0191924_39	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0191924_41	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0191924_42	PHROG	phrog_937	hemolysin	other
UHGV-0191924_42	UniRef90	UniRef90_R5GGW2	Phosphoglucosamine mutase	NA
UHGV-0191924_42	eggNOG-mapper	1469948.JPNB01000002_gene3854	NA	NA
UHGV-0191924_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0191924_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0191924_44	UniRef90	UniRef90_UPI0009E9D8C8	recombinase family protein	NA
UHGV-0191924_44	eggNOG-mapper	457396.CSBG_00706	Resolvase, N terminal domain	NA
UHGV-0191924_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0191924_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0191924_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0191924_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0191924_44	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0191924_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0191924_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0191924_45	UniRef90	UniRef90_A0A7V3HN60	Helix-turn-helix domain-containing protein	NA
UHGV-0191924_45	eggNOG-mapper	1500281.JQKZ01000007_gene3961	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0191924_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0191924_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0191924_45	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0191924_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0191924_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0191924_46	UniRef90	UniRef90_A0A1Y4HYP5	Repressor LexA	NA
UHGV-0191924_46	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0191924_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0191924_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0191924_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0191924_47	UniRef90	UniRef90_A0A2A7B798	NA	NA
UHGV-0191924_47	eggNOG-mapper	272623.L39394	NA	NA
UHGV-0191924_47	Pfam	PF05339	NA	DUF739
UHGV-0191924_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0191924_47	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0191924_49	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0191924_49	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0191924_49	UniRef90	UniRef90_UPI001C02CD36	AAA family ATPase	NA
UHGV-0191924_49	eggNOG-mapper	1158607.UAU_01715	nuclear chromosome segregation	NA
UHGV-0191924_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0191924_49	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0191924_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0191924_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0191924_51	UniRef90	UniRef90_UPI001B0B2D3A	recombinase RecT	NA
UHGV-0191924_51	eggNOG-mapper	160799.PBOR_24270	RecT family	NA
UHGV-0191924_51	Pfam	PF03837	RecT family	RecT
UHGV-0191924_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0191924_52	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0191924_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0191924_52	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0191924_52	eggNOG-mapper	293826.Amet_2603	Metallo-beta-lactamase superfamily	NA
UHGV-0191924_52	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0191924_52	dbAPIS	APIS044	NA	NA
UHGV-0191924_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0191924_52	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0191924_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0191924_54	UniRef90	UniRef90_A0A7U9JY91	ERCC4 domain-containing protein	NA
UHGV-0191924_54	eggNOG-mapper	1304866.K413DRAFT_4617	ERCC4 domain	NA
UHGV-0191924_54	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0191924_54	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0191924_56	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0191924_56	UniRef90	UniRef90_A0A7U9CGY9	Phg_2220_C domain-containing protein	NA
UHGV-0191924_56	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0191924_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0191924_56	Structural annotation	PF06926	NA	NA
UHGV-0191924_57	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0191924_57	PHROG	phrog_11992	NA	unknown function
UHGV-0191924_57	eggNOG-mapper	903814.ELI_3967	DNA primase activity	NA
UHGV-0191924_57	PADLOC	drt-UG29	DRT	DRT
UHGV-0191924_57	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0191924_57	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0191924_58	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0191924_58	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0191924_58	UniRef90	UniRef90_A0A1W1YYB2	Twinkle protein	NA
UHGV-0191924_58	eggNOG-mapper	1226322.HMPREF1545_00017	DnaB-like helicase C terminal domain	NA
UHGV-0191924_58	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0191924_58	COG	COG0305	Replicative DNA helicase	NA
UHGV-0191924_58	Structural annotation	PF03796, MF_04154, NF006443, COG0305	NA	NA
UHGV-0191924_59	UniRef90	UniRef90_A0A413UEY2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0191924_59	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0191924_59	COG	COG0270	DNA-cytosine methylase	NA