UHGV-0192735

Genome information

Genome length 27,786 bps

CDS count 41

Completeness 82.62% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0192735
vOTU ID	vOTU-030076
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00993240_a1_ct23563_vs1@linear@Myoviridae__sp._ctWmv1
BioSample	SAMN00993240
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.4
Jumbo phage	No

Genome content
Genome length	27,786 bps
GC content	38.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.38%
Average CDS length	623.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192735_2	PHROG	phrog_24267	NA	unknown function
UHGV-0192735_2	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0192735_2	eggNOG-mapper	33035.JPJF01000023_gene3223	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0192735_2	Pfam	PF12525	NA	DUF3726
UHGV-0192735_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0192735_2	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0192735_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0192735_3	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0192735_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0192735_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0192735_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0192735_3	COG	COG4926	Phage-related protein	NA
UHGV-0192735_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0192735_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0192735_4	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0192735_4	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0192735_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0192735_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0192735_5	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0192735_5	UniRef90	UniRef90_UPI000C7C3162	phage tail tape measure protein	NA
UHGV-0192735_5	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0192735_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0192735_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0192735_5	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0192735_6	PHROG	phrog_3033	NA	unknown function
UHGV-0192735_6	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0192735_7	PHROG	phrog_709	NA	unknown function
UHGV-0192735_7	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0192735_7	Structural annotation	PF11836	NA	NA
UHGV-0192735_8	PHROG	phrog_88	major tail protein	tail
UHGV-0192735_8	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-0192735_8	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0192735_8	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0192735_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0192735_8	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0192735_9	PHROG	phrog_78	tail terminator	connector
UHGV-0192735_9	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0192735_9	Structural annotation	PF20765	NA	NA
UHGV-0192735_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0192735_10	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0192735_10	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0192735_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0192735_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0192735_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0192735_11	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0192735_11	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0192735_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0192735_12	PHROG	phrog_2550	NA	unknown function
UHGV-0192735_12	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0192735_12	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0192735_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0192735_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0192735_13	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0192735_13	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0192735_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0192735_13	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0192735_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0192735_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0192735_13	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0192735_14	KOfam	K06904	NA	NA
UHGV-0192735_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0192735_14	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0192735_14	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0192735_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0192735_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0192735_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0192735_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0192735_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0192735_15	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0192735_15	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0192735_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0192735_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0192735_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0192735_15	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0192735_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0192735_16	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0192735_16	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0192735_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0192735_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0192735_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0192735_16	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0192735_17	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0192735_17	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0192735_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0192735_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0192735_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0192735_18	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0192735_18	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0192735_21	PHROG	phrog_7488	NA	unknown function
UHGV-0192735_21	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0192735_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0192735_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0192735_22	UniRef90	UniRef90_A0A6N9QF69	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0192735_22	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0192735_22	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0192735_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0192735_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0192735_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0192735_22	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0192735_23	PHROG	phrog_5444	NA	unknown function
UHGV-0192735_23	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-0192735_24	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0192735_24	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0192735_24	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0192735_24	eggNOG-mapper	641107.CDLVIII_5566	Belongs to the dCTP deaminase family	NA
UHGV-0192735_24	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0192735_24	COG	COG0717	dCTP deaminase	NA
UHGV-0192735_24	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0192735_25	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0192735_25	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0192735_25	eggNOG-mapper	866776.HMPREF9321_0556	Helix-turn-helix domain	NA
UHGV-0192735_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192735_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0192735_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0192735_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0192735_27	UniRef90	UniRef90_A0A7X5DCG3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0192735_27	eggNOG-mapper	272563.CD630_09360	Endodeoxyribonuclease RusA	NA
UHGV-0192735_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0192735_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0192735_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0192735_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0192735_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192735_28	UniRef90	UniRef90_A0A1C6HFV4	DNA replication protein	NA
UHGV-0192735_28	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0192735_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0192735_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0192735_28	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0192735_29	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0192735_29	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0192735_29	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0192735_29	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0192735_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0192735_29	Structural annotation	PF14297	NA	NA
UHGV-0192735_30	PHROG	phrog_2113	NA	unknown function
UHGV-0192735_30	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0192735_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0192735_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192735_31	UniRef90	UniRef90_A0A4Z0YC28	Single-stranded DNA-binding protein	NA
UHGV-0192735_31	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0192735_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0192735_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0192735_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0192735_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0192735_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0192735_32	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0192735_32	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0192735_32	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0192735_32	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0192735_33	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0192735_33	UniRef90	UniRef90_UPI00190EAB3F	ERF family protein	NA
UHGV-0192735_33	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0192735_33	Pfam	PF04404	ERF superfamily	ERF
UHGV-0192735_33	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0192735_36	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0192735_36	Structural annotation	PF20432, MF_00535, NF041951, COG1396	NA	NA
UHGV-0192735_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0192735_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0192735_39	UniRef90	UniRef90_A0A252F720	HTH cro/C1-type domain-containing protein	NA
UHGV-0192735_39	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0192735_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192735_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0192735_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0192735_39	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0192735_41	KOfam	K14059	int; integrase	NA
UHGV-0192735_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0192735_41	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0192735_41	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0192735_41	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0192735_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192735_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192735_41	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA