UHGV-0192917

Genome information

Genome length 31,863 bps

CDS count 41

Completeness 72.88% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0192917
vOTU ID	vOTU-022999
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05414989_a1_ct51325_vs1@Myoviridae__sp._ct3J61
BioSample	SAMN05414989
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.54
Jumbo phage	No

Genome content
Genome length	31,863 bps
GC content	52.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.39%
Average CDS length	735.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192917_1	Structural annotation	PF08861, COG5440	NA	NA
UHGV-0192917_2	Structural annotation	PF08861, COG5440	NA	NA
UHGV-0192917_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0192917_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192917_4	UniRef90	UniRef90_A0A414NWF1	Single-stranded DNA-binding protein	NA
UHGV-0192917_4	eggNOG-mapper	546271.Selsp_1347	Single-strand binding protein family	NA
UHGV-0192917_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0192917_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0192917_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0192917_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0192917_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0192917_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0192917_6	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0192917_6	UniRef90	UniRef90_A0A414NWU9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0192917_6	eggNOG-mapper	936573.HMPREF1147_1316	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0192917_6	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0192917_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0192917_6	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0192917_7	Structural annotation	PF13051, PF06892, MF_00948, NF000331, COG2139	NA	NA
UHGV-0192917_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0192917_8	UniRef90	UniRef90_A0A414NWR2	NA	NA
UHGV-0192917_8	eggNOG-mapper	500635.MITSMUL_03175	NA	NA
UHGV-0192917_8	Pfam	PF11753	NA	DUF3310
UHGV-0192917_9	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0192917_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0192917_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0192917_10	UniRef90	UniRef90_A0A6I2USJ5	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0192917_10	eggNOG-mapper	679201.HMPREF9334_00370	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0192917_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0192917_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0192917_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0192917_10	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0192917_13	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0192917_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0192917_15	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0192917_15	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0192917_15	Pfam	PF14359	NA	DUF4406
UHGV-0192917_15	Structural annotation	PF14359, TIGR03646, COG3613	NA	NA
UHGV-0192917_16	PHROG	phrog_918	NA	unknown function
UHGV-0192917_16	UniRef90	UniRef90_UPI0008DFA801	NA	NA
UHGV-0192917_16	eggNOG-mapper	1042156.CXIVA_01830	NA	NA
UHGV-0192917_16	Pfam	PF19791	NA	DUF6275
UHGV-0192917_16	Structural annotation	PF19791	NA	NA
UHGV-0192917_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0192917_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0192917_18	UniRef90	UniRef90_A0A412KTT0	PBSX family phage terminase large subunit	NA
UHGV-0192917_18	eggNOG-mapper	1485543.JMME01000005_gene863	Phage terminase, large subunit	NA
UHGV-0192917_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0192917_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0192917_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0192917_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0192917_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0192917_19	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0192917_19	UniRef90	UniRef90_A0A412KTT6	Poly(3-hydroxybutyrate) depolymerase	NA
UHGV-0192917_19	eggNOG-mapper	1485543.JMME01000005_gene864	translation initiation factor activity	NA
UHGV-0192917_19	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0192917_19	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0192917_21	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-0192917_22	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0192917_22	UniRef90	UniRef90_A0A412KTT2	Phage head protein	NA
UHGV-0192917_22	eggNOG-mapper	1485543.JMME01000005_gene868	NA	NA
UHGV-0192917_22	Pfam	PF17236	NA	DUF5309
UHGV-0192917_22	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0192917_24	Structural annotation	PF20387	NA	NA
UHGV-0192917_25	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0192917_25	Structural annotation	PF20387	NA	NA
UHGV-0192917_26	eggNOG-mapper	1379858.N508_00283	NA	NA
UHGV-0192917_26	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0192917_27	PHROG	phrog_11262	tail protein	tail
UHGV-0192917_27	UniRef90	UniRef90_UPI001647F323	phage tail protein	NA
UHGV-0192917_27	eggNOG-mapper	644968.DFW101_3036	NA	NA
UHGV-0192917_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0192917_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0192917_28	UniRef90	UniRef90_A0A412KTR9	Reverse transcriptase domain-containing protein	NA
UHGV-0192917_28	eggNOG-mapper	1031288.AXAA01000043_gene1778	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0192917_28	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0192917_28	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0192917_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0192917_28	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0192917_29	eggNOG-mapper	555500.I215_01788	NA	NA
UHGV-0192917_30	eggNOG-mapper	1201035.KE007213_gene1445	NA	NA
UHGV-0192917_32	UniRef90	UniRef90_A0A0U1L3D3	Hint_2 domain-containing protein	NA
UHGV-0192917_32	eggNOG-mapper	1123288.SOV_4c02760	NA	NA
UHGV-0192917_32	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0192917_35	PHROG	phrog_9854	NA	unknown function
UHGV-0192917_35	UniRef90	UniRef90_A0A412KTR3	Lytic transglycosylase domain-containing protein	NA
UHGV-0192917_35	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0192917_35	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0192917_35	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0192917_35	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0192917_37	PHROG	phrog_28789	NA	unknown function
UHGV-0192917_37	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0192917_37	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0192917_38	KOfam	K07273	acm; lysozyme	NA
UHGV-0192917_38	PHROG	phrog_6745	endolysin	lysis
UHGV-0192917_38	UniRef90	UniRef90_UPI000B06DDC9	glycosyl hydrolase family 25	NA
UHGV-0192917_38	eggNOG-mapper	1392502.JNIO01000008_gene2174	Glycosyl hydrolases family 25	NA
UHGV-0192917_38	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0192917_38	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0192917_38	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0192917_40	KOfam	K08316	rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]	NA
UHGV-0192917_40	UniRef90	UniRef90_A0A173ZFU8	Ribosomal RNA small subunit methyltransferase D	NA
UHGV-0192917_40	eggNOG-mapper	1410665.JNKR01000005_gene1605	RNA methyltransferase RsmD family	NA
UHGV-0192917_40	Pfam	PF03602	Conserved hypothetical protein 95	Cons_hypoth95
UHGV-0192917_40	NCBIFam	TIGR00095.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA
UHGV-0192917_40	COG	COG0742	16S rRNA G966 N2-methylase RsmD	NA
UHGV-0192917_41	KOfam	K00954	E2.7.7.3A, coaD, kdtB; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]	NA
UHGV-0192917_41	PHROG	phrog_29208	NA	unknown function
UHGV-0192917_41	UniRef90	UniRef90_C9KQ68	Phosphopantetheine adenylyltransferase	NA
UHGV-0192917_41	eggNOG-mapper	500635.MITSMUL_05383	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate	NA
UHGV-0192917_41	Pfam	PF01467	Cytidylyltransferase-like	CTP_transf_like
UHGV-0192917_41	NCBIFam	TIGR01510.1	pantetheine-phosphate adenylyltransferase	NA
UHGV-0192917_41	COG	COG0669	Phosphopantetheine adenylyltransferase	NA