UHGV-0193010

Genome information

vOTU vOTU-020034

Genome length 38,297 bps

CDS count 51

Completeness 61.78% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0193010
vOTU ID	vOTU-020034
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05826613_a1_ct46023_vs1@linear@Myoviridae__sp._ctaXh1
BioSample	SAMN05826613
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.31
Jumbo phage	No

Genome content
Genome length	38,297 bps
GC content	39.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.60%
Average CDS length	675.12 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193010_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0193010_1	Structural annotation	PF16677	NA	NA
UHGV-0193010_2	Structural annotation	PF13069	NA	NA
UHGV-0193010_4	Structural annotation	PF06004, NF033216, COG4568	NA	NA
UHGV-0193010_7	PHROG	phrog_1233	NA	unknown function
UHGV-0193010_7	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0193010_10	PHROG	phrog_1048	NA	unknown function
UHGV-0193010_10	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-0193010_10	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0193010_10	Pfam	PF11195	NA	DUF2829
UHGV-0193010_10	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0193010_10	Structural annotation	PF11195	NA	NA
UHGV-0193010_11	PHROG	phrog_918	NA	unknown function
UHGV-0193010_11	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0193010_11	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0193010_11	Pfam	PF19791	NA	DUF6275
UHGV-0193010_11	Structural annotation	PF19791	NA	NA
UHGV-0193010_12	KOfam	K03744	lemA; LemA protein	NA
UHGV-0193010_12	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0193010_12	UniRef90	UniRef90_A0A893W810	LemA family protein	NA
UHGV-0193010_12	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0193010_12	Pfam	PF04011	LemA family	LemA
UHGV-0193010_12	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0193010_12	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0193010_13	PHROG	phrog_3886	NA	unknown function
UHGV-0193010_13	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-0193010_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0193010_16	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0193010_16	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0193010_16	COG	COG5410	NA	NA
UHGV-0193010_16	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0193010_17	UniRef90	UniRef90_A0A893WAZ5	Helix-turn-helix domain-containing protein	NA
UHGV-0193010_17	eggNOG-mapper	1232453.BAIF02000058_gene1624	NA	NA
UHGV-0193010_17	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0193010_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0193010_18	UniRef90	UniRef90_A0A396PR41	Phage portal protein	NA
UHGV-0193010_18	eggNOG-mapper	476272.RUMHYD_01943	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0193010_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0193010_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0193010_19	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0193010_19	UniRef90	UniRef90_A0A396PS39	Phage_Mu_F domain-containing protein	NA
UHGV-0193010_19	eggNOG-mapper	370623.Q1WDG7_9CAUD	Phage Mu protein F like protein	NA
UHGV-0193010_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0193010_19	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0193010_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0193010_20	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0193010_20	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-0193010_21	Structural annotation	PF14265, NF038403	NA	NA
UHGV-0193010_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0193010_22	UniRef90	UniRef90_A0A396PR42	N4-gp56 family major capsid protein	NA
UHGV-0193010_22	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0193010_22	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0193010_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0193010_24	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0193010_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0193010_25	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0193010_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0193010_26	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0193010_26	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0193010_26	AcrCatalog	cluster_24841	NA	NA
UHGV-0193010_26	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0193010_27	Structural annotation	PF05657	NA	NA
UHGV-0193010_28	PHROG	phrog_158	major tail protein	tail
UHGV-0193010_28	UniRef90	UniRef90_A0A415D4T9	Phage tail protein	NA
UHGV-0193010_28	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0193010_28	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0193010_28	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0193010_31	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0193010_31	UniRef90	UniRef90_A0A396PS29	SLT domain-containing protein	NA
UHGV-0193010_31	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0193010_31	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0193010_31	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0193010_32	PHROG	phrog_1194	NA	unknown function
UHGV-0193010_32	eggNOG-mapper	60520.HR47_13415	NA	NA
UHGV-0193010_32	Pfam	PF20458	NA	DUF6711
UHGV-0193010_32	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0193010_33	PHROG	phrog_6616	tail protein	tail
UHGV-0193010_33	UniRef90	UniRef90_A0A1C5RZB4	Peptidase S74 domain-containing protein	NA
UHGV-0193010_33	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0193010_33	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0193010_34	PHROG	phrog_7389	tail fiber protein	tail
UHGV-0193010_34	UniRef90	UniRef90_UPI000E40D12B	InlB B-repeat-containing protein	NA
UHGV-0193010_34	eggNOG-mapper	35760.BCHO_0826	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0193010_34	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0193010_34	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0193010_34	Structural annotation	PF05895, TIGR03900, COG5608	NA	NA
UHGV-0193010_35	Structural annotation	PF07041	NA	NA
UHGV-0193010_37	PHROG	phrog_17147	NA	unknown function
UHGV-0193010_37	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0193010_38	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0193010_38	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0193010_38	UniRef90	UniRef90_A0A1C5N0E2	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0193010_38	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0193010_38	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0193010_38	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0193010_38	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0193010_40	UniRef90	UniRef90_A0A2V2D4A1	XkdX family protein	NA
UHGV-0193010_40	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0193010_40	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0193010_40	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0193010_41	PHROG	phrog_937	hemolysin	other
UHGV-0193010_41	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0193010_42	PHROG	phrog_1129	holin	lysis
UHGV-0193010_42	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0193010_42	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0193010_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0193010_42	Structural annotation	PF16079	NA	NA
UHGV-0193010_43	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0193010_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0193010_44	PHROG	phrog_291	endolysin	lysis
UHGV-0193010_44	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0193010_44	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0193010_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0193010_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0193010_44	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0193010_45	eggNOG-mapper	622312.ROSEINA2194_00523	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0193010_45	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0193010_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0193010_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0193010_46	UniRef90	UniRef90_UPI00131A09CC	recombinase family protein	NA
UHGV-0193010_46	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0193010_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0193010_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0193010_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0193010_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0193010_46	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0193010_47	UniRef90	UniRef90_A0A173VJ11	Predicted membrane protein	NA
UHGV-0193010_47	eggNOG-mapper	411461.DORFOR_01127	NA	NA
UHGV-0193010_47	AcrCatalog	cluster_71895	NA	NA
UHGV-0193010_47	Structural annotation	PF11611, PF03843, MF_00791, MF_01959, TIGR03943, NF003465, COG3065, COG2967	NA	NA
UHGV-0193010_49	PHROG	phrog_87	metallo-protease	other
UHGV-0193010_49	UniRef90	UniRef90_UPI001C0252A2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0193010_49	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0193010_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0193010_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0193010_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0193010_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0193010_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0193010_50	UniRef90	UniRef90_A0A373MWG9	XRE family transcriptional regulator	NA
UHGV-0193010_50	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0193010_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193010_50	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0193010_50	Structural annotation	PF12844, NF041951, COG1396	NA	NA