UHGV-0193012

Genome information

Genome length 37,272 bps

CDS count 45

Completeness 94.93% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0193012
vOTU ID	vOTU-074422
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05826619_a1_ct14425_vs1@linear@Podoviridae__sp._ctFDt1
BioSample	SAMN05826619
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.74
Jumbo phage	No

Genome content
Genome length	37,272 bps
GC content	41.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.18%
Average CDS length	785.67 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193012_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0193012_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0193012_1	UniRef90	UniRef90_A0A239Z9X8	Single-stranded DNA-binding protein	NA
UHGV-0193012_1	eggNOG-mapper	1128111.HMPREF0870_00102	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0193012_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0193012_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0193012_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0193012_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0193012_2	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0193012_2	UniRef90	UniRef90_A0A1C6K6Q7	Holliday junction resolvase	NA
UHGV-0193012_2	eggNOG-mapper	93220.LV28_24675	Endodeoxyribonuclease RusA	NA
UHGV-0193012_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0193012_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0193012_2	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0193012_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0193012_3	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0193012_3	Pfam	PF07374	NA	DUF1492
UHGV-0193012_3	Structural annotation	PF07374, TIGR02984	NA	NA
UHGV-0193012_5	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0193012_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0193012_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0193012_6	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0193012_6	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0193012_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0193012_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0193012_6	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0193012_8	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0193012_8	UniRef90	UniRef90_A0A239Z979	Bacteriophage head to tail connecting protein	NA
UHGV-0193012_8	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0193012_8	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0193012_8	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0193012_9	PHROG	phrog_528	NA	unknown function
UHGV-0193012_9	UniRef90	UniRef90_A0A8E8TUT9	Endopeptidase	NA
UHGV-0193012_9	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0193012_10	PHROG	phrog_458	protease	other
UHGV-0193012_10	UniRef90	UniRef90_UPI0019E883D9	peptidase	NA
UHGV-0193012_10	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0193012_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0193012_11	UniRef90	UniRef90_A0A0B2JTD7	NA	NA
UHGV-0193012_11	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-0193012_11	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0193012_11	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0193012_12	Structural annotation	PF21190	NA	NA
UHGV-0193012_14	PHROG	phrog_394	tail protein	tail
UHGV-0193012_14	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0193012_14	Structural annotation	PF17212	NA	NA
UHGV-0193012_15	PHROG	phrog_376	tail protein	tail
UHGV-0193012_15	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0193012_15	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0193012_16	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0193012_16	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-0193012_17	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0193012_17	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0193012_17	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0193012_18	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0193012_18	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-0193012_18	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0193012_18	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0193012_18	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0193012_19	PHROG	phrog_9880	NA	unknown function
UHGV-0193012_19	UniRef90	UniRef90_A0A239Z8B8	LPD3 domain-containing protein	NA
UHGV-0193012_19	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0193012_19	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0193012_19	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0193012_20	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-0193012_20	Structural annotation	PF03906, NF012201, COG4675	NA	NA
UHGV-0193012_24	PHROG	phrog_27828	NA	unknown function
UHGV-0193012_24	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0193012_24	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0193012_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0193012_25	PHROG	phrog_291	endolysin	lysis
UHGV-0193012_25	UniRef90	UniRef90_UPI001D073E26	glycosyl hydrolase family 25	NA
UHGV-0193012_25	eggNOG-mapper	1280676.AUJO01000002_gene1400	Glycosyl hydrolases family 25	NA
UHGV-0193012_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0193012_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0193012_25	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0193012_26	PHROG	phrog_18860	NA	unknown function
UHGV-0193012_27	KOfam	K14059	int; integrase	NA
UHGV-0193012_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0193012_27	UniRef90	UniRef90_A0A0J6WPJ6	Tyr recombinase domain-containing protein	NA
UHGV-0193012_27	eggNOG-mapper	1401067.HMPREF0872_06920	Belongs to the 'phage' integrase family	NA
UHGV-0193012_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0193012_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0193012_27	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0193012_28	PHROG	phrog_5059	NA	unknown function
UHGV-0193012_28	UniRef90	UniRef90_UPI00138A30FE	NA	NA
UHGV-0193012_28	eggNOG-mapper	886377.Murru_3298	NA	NA
UHGV-0193012_28	Pfam	PF08861	NA	DUF1828
UHGV-0193012_28	Structural annotation	PF08861, PF01939, NF011271, COG1787	NA	NA
UHGV-0193012_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193012_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0193012_30	UniRef90	UniRef90_R5BDD4	HTH cro/C1-type domain-containing protein	NA
UHGV-0193012_30	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0193012_30	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0193012_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0193012_31	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0193012_31	UniRef90	UniRef90_UPI000F8DC23A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0193012_31	eggNOG-mapper	883156.HMPREF9282_00923	Phage antirepressor protein	NA
UHGV-0193012_31	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0193012_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0193012_31	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0193012_31	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0193012_33	PHROG	phrog_674	NA	unknown function
UHGV-0193012_33	UniRef90	UniRef90_UPI000E71DE97	NA	NA
UHGV-0193012_33	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0193012_33	Pfam	PF07083	NA	DUF1351
UHGV-0193012_33	Structural annotation	PF07083	NA	NA
UHGV-0193012_34	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0193012_34	UniRef90	UniRef90_UPI001402D75D	ERF family protein	NA
UHGV-0193012_34	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0193012_34	Pfam	PF04404	ERF superfamily	ERF
UHGV-0193012_34	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0193012_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0193012_35	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0193012_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0193012_36	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0193012_36	UniRef90	UniRef90_UPI001D092C21	HNH endonuclease	NA
UHGV-0193012_36	eggNOG-mapper	485913.Krac_2277	endonuclease activity	NA
UHGV-0193012_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0193012_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0193012_36	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0193012_38	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0193012_38	UniRef90	UniRef90_A0A165XW61	DnaB_2 domain-containing protein	NA
UHGV-0193012_38	eggNOG-mapper	218284.CCDN010000001_gene904	Replication initiation and membrane attachment	NA
UHGV-0193012_38	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0193012_38	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0193012_38	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0193012_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0193012_38	Structural annotation	PF04492, MF_01911, NF040939, COG3355	NA	NA
UHGV-0193012_39	PHROG	phrog_9804	NA	unknown function
UHGV-0193012_39	Structural annotation	PF11417	NA	NA
UHGV-0193012_42	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0193012_42	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0193012_42	UniRef90	UniRef90_S4U059	dUTP diphosphatase-like protein	NA
UHGV-0193012_42	eggNOG-mapper	246194.CHY_0300	dUTP diphosphatase	NA
UHGV-0193012_42	Pfam	PF00692	dUTPase	dUTPase
UHGV-0193012_42	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0193012_42	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0193012_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0193012_43	PHROG	phrog_236	nucleotide kinase	other
UHGV-0193012_43	UniRef90	UniRef90_A0A143YJD9	HTH cro/C1-type domain-containing protein	NA
UHGV-0193012_43	eggNOG-mapper	883112.HMPREF9707_01487	Helix-turn-helix	NA
UHGV-0193012_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193012_43	Pfam	PF11753	NA	DUF3310
UHGV-0193012_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0193012_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0193012_45	PHROG	phrog_25370	NA	unknown function
UHGV-0193012_45	UniRef90	UniRef90_W1WNX5	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-0193012_45	eggNOG-mapper	944564.HMPREF9200_1593	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0193012_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0193012_45	COG	COG0629	Single-stranded DNA-binding protein	NA