UHGV-0193468

Genome information

vOTU vOTU-019651

Genome length 36,281 bps

CDS count 52

Completeness 89.76% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0193468
vOTU ID	vOTU-019651
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN06164955_a1_ct168073_vs1@linear@Myoviridae__sp._ctY4I1
BioSample	SAMN06164955
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.86
Jumbo phage	No

Genome content
Genome length	36,281 bps
GC content	41.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.56%
Average CDS length	634.15 bps
tRNA count	7
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193468_1	KOfam	K14059	int; integrase	NA
UHGV-0193468_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0193468_1	UniRef90	UniRef90_E6LJI2	Site-specific recombinase, phage integrase family	NA
UHGV-0193468_1	eggNOG-mapper	1095750.HMPREF9970_1001	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0193468_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0193468_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0193468_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0193468_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0193468_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0193468_2	UniRef90	UniRef90_R5F579	HicB family toxin-antitoxin system	NA
UHGV-0193468_2	eggNOG-mapper	1410612.JNKO01000006_gene1220	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0193468_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0193468_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0193468_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0193468_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0193468_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0193468_3	UniRef90	UniRef90_A0A1Q9J502	Toxin HicA	NA
UHGV-0193468_3	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0193468_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0193468_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0193468_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0193468_4	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0193468_4	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0193468_4	UniRef90	UniRef90_UPI00156F0B88	type I restriction endonuclease	NA
UHGV-0193468_4	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0193468_4	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0193468_4	COG	COG4748	NA	NA
UHGV-0193468_4	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0193468_5	PHROG	phrog_87	metallo-protease	other
UHGV-0193468_5	UniRef90	UniRef90_S0J0Z9	Peptidase_M78 domain-containing protein	NA
UHGV-0193468_5	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-0193468_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0193468_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0193468_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0193468_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0193468_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0193468_6	UniRef90	UniRef90_U2RAG2	HTH cro/C1-type domain-containing protein	NA
UHGV-0193468_6	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0193468_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193468_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0193468_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0193468_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0193468_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0193468_7	UniRef90	UniRef90_U2Q2K9	DNA-binding helix-turn-helix protein	NA
UHGV-0193468_7	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0193468_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193468_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0193468_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0193468_9	PHROG	phrog_36464	NA	unknown function
UHGV-0193468_9	eggNOG-mapper	1235790.C805_00019	NA	NA
UHGV-0193468_9	Structural annotation	PF09035	NA	NA
UHGV-0193468_12	PHROG	phrog_32437	NA	unknown function
UHGV-0193468_12	eggNOG-mapper	525897.Dbac_1129	PFAM Lytic transglycosylase catalytic	NA
UHGV-0193468_12	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0193468_12	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0193468_12	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0193468_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0193468_13	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0193468_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0193468_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0193468_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0193468_14	UniRef90	UniRef90_A0A350VVB3	RNase H type-1 domain-containing protein	NA
UHGV-0193468_14	eggNOG-mapper	1121451.DESAM_20563	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0193468_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0193468_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0193468_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0193468_15	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0193468_16	PHROG	phrog_8470	NA	unknown function
UHGV-0193468_16	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0193468_16	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0193468_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0193468_16	Structural annotation	PF14284	NA	NA
UHGV-0193468_17	PHROG	phrog_15077	NA	unknown function
UHGV-0193468_17	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0193468_17	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0193468_17	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0193468_18	PHROG	phrog_7566	NA	unknown function
UHGV-0193468_18	UniRef90	UniRef90_A0A3B9CDC4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0193468_18	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0193468_19	UniRef90	UniRef90_A0A3R6K9V3	NA	NA
UHGV-0193468_19	eggNOG-mapper	290402.Cbei_0730	NA	NA
UHGV-0193468_19	Pfam	PF14199	NA	DUF4317
UHGV-0193468_19	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0193468_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0193468_21	UniRef90	UniRef90_UPI000E41BACA	NA	NA
UHGV-0193468_21	eggNOG-mapper	1205683.CAKR01000002_gene2789	NA	NA
UHGV-0193468_21	Pfam	PF14359	NA	DUF4406
UHGV-0193468_21	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0193468_21	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0193468_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0193468_24	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0193468_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0193468_24	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0193468_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0193468_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0193468_25	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0193468_25	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0193468_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0193468_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0193468_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0193468_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0193468_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0193468_26	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-0193468_26	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0193468_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0193468_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0193468_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0193468_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0193468_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0193468_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0193468_27	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-0193468_27	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0193468_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0193468_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0193468_28	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0193468_28	UniRef90	UniRef90_A0A3R6VT31	Phage_Mu_F domain-containing protein	NA
UHGV-0193468_28	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0193468_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0193468_28	COG	COG2369	NA	NA
UHGV-0193468_28	Structural annotation	PF04233, PF15188, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0193468_30	PHROG	phrog_872	NA	unknown function
UHGV-0193468_30	UniRef90	UniRef90_UPI0018C70BF8	NA	NA
UHGV-0193468_30	eggNOG-mapper	573413.Spirs_2785	NA	NA
UHGV-0193468_30	Pfam	PF11195	NA	DUF2829
UHGV-0193468_30	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0193468_30	Structural annotation	PF11195	NA	NA
UHGV-0193468_31	PHROG	phrog_372	tail protein	tail
UHGV-0193468_31	UniRef90	UniRef90_UPI001D096464	NA	NA
UHGV-0193468_31	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0193468_31	Pfam	PF05895	NA	DUF859
UHGV-0193468_31	COG	COG4675	Phage tail collar domain	NA
UHGV-0193468_31	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0193468_32	Structural annotation	PF07041	NA	NA
UHGV-0193468_33	PHROG	phrog_1863	NA	unknown function
UHGV-0193468_33	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0193468_34	PHROG	phrog_18218	NA	unknown function
UHGV-0193468_34	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-0193468_34	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0193468_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0193468_35	PHROG	phrog_291	endolysin	lysis
UHGV-0193468_35	UniRef90	UniRef90_A0A3R6JQ14	1,4-beta-N-acetylmuramidase	NA
UHGV-0193468_35	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0193468_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0193468_35	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0193468_35	Structural annotation	PF01183, MF_00152, NF008522, COG3757	NA	NA
UHGV-0193468_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0193468_36	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0193468_36	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0193468_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0193468_36	Structural annotation	PF06810	NA	NA
UHGV-0193468_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-0193468_37	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0193468_37	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0193468_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0193468_39	PHROG	phrog_1236	head protein	head and packaging
UHGV-0193468_39	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0193468_39	Structural annotation	PF05135	NA	NA
UHGV-0193468_40	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0193468_40	UniRef90	UniRef90_A0A416AFR5	Head-tail adaptor protein	NA
UHGV-0193468_40	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0193468_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0193468_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0193468_41	UniRef90	UniRef90_A0A374UQG1	HK97 gp10 family phage protein	NA
UHGV-0193468_41	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0193468_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0193468_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0193468_42	PHROG	phrog_957	head protein	head and packaging
UHGV-0193468_42	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0193468_42	Structural annotation	PF12691	NA	NA
UHGV-0193468_43	PHROG	phrog_885	major tail protein	tail
UHGV-0193468_43	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0193468_43	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0193468_44	PHROG	phrog_1021	NA	unknown function
UHGV-0193468_44	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0193468_46	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0193468_46	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0193468_46	COG	COG5412	Phage-related protein	NA
UHGV-0193468_46	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0193468_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0193468_47	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0193468_47	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0193468_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0193468_47	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0193468_48	PHROG	phrog_3558	tail protein	tail
UHGV-0193468_48	UniRef90	UniRef90_UPI000E5CB7B2	phage tail protein	NA
UHGV-0193468_48	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0193468_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0193468_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0193468_48	COG	COG4926	Phage-related protein	NA
UHGV-0193468_48	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0193468_50	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0193468_50	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0193468_50	UniRef90	UniRef90_R6RMH8	HicB-like domain-containing protein	NA
UHGV-0193468_50	eggNOG-mapper	1507.HMPREF0262_01195	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0193468_50	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0193468_50	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0193468_50	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0193468_51	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0193468_51	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0193468_51	UniRef90	UniRef90_R6QGC1	Toxin-antitoxin system toxin component HicA family	NA
UHGV-0193468_51	eggNOG-mapper	665950.HMPREF1025_02513	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0193468_51	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0193468_51	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0193468_51	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0193468_52	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0193468_52	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0193468_52	UniRef90	UniRef90_R6QRM3	Toxin-antitoxin system antitoxin component HicB family	NA
UHGV-0193468_52	eggNOG-mapper	2754.EH55_13025	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0193468_52	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0193468_52	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0193468_52	Structural annotation	PF15919, COG1598	NA	NA