UHGV-0193623

Genome information

Genome length 31,477 bps

CDS count 48

Completeness 97.05% (high-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0193623
vOTU ID	vOTU-059661
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05827010_a1_ct56502_vs1@linear@Myoviridae__sp._ctBix1
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.14
Jumbo phage	No

Genome content
Genome length	31,477 bps
GC content	49.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.58%
Average CDS length	602.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193623_1	KOfam	K12410	npdA; NAD-dependent deacetylase [EC:2.3.1.286]	NA
UHGV-0193623_1	PHROG	phrog_2162	Sir2 (NAD-dependent deacetylase)	DNA, RNA and nucleotide metabolism
UHGV-0193623_1	UniRef90	UniRef90_J1H6Q8	NAD-dependent protein deacetylase	NA
UHGV-0193623_1	eggNOG-mapper	1121334.KB911072_gene2624	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form	NA
UHGV-0193623_1	Pfam	PF02146	Sir2 family	SIR2
UHGV-0193623_1	NCBIFam	NF001752.0	NAD-dependent protein deacylase	NA
UHGV-0193623_1	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0193623_1	HAMAP	MF_01968	NAD-dependent protein deacetylase [cobB]	NA
UHGV-0193623_1	Structural annotation	PF02146, MF_01968, NF001752, COG0846	NA	NA
UHGV-0193623_2	KOfam	K14059	int; integrase	NA
UHGV-0193623_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0193623_2	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0193623_2	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0193623_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0193623_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0193623_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0193623_3	PHROG	phrog_23726	NA	unknown function
UHGV-0193623_3	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-0193623_3	eggNOG-mapper	428125.CLOLEP_01549	cell wall binding repeat	NA
UHGV-0193623_3	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0193623_4	PHROG	phrog_1914	NA	unknown function
UHGV-0193623_4	UniRef90	UniRef90_UPI001898DE17	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0193623_4	eggNOG-mapper	1121334.KB911073_gene1841	NA	NA
UHGV-0193623_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0193623_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0193623_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0193623_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0193623_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0193623_5	UniRef90	UniRef90_UPI0018996E8C	helix-turn-helix domain-containing protein	NA
UHGV-0193623_5	eggNOG-mapper	1151292.QEW_0314	DNA-binding helix-turn-helix protein	NA
UHGV-0193623_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193623_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0193623_5	Structural annotation	PF12844, NF007257, COG1476	NA	NA
UHGV-0193623_7	PHROG	phrog_6996	NA	unknown function
UHGV-0193623_12	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0193623_14	eggNOG-mapper	1121334.KB911073_gene1845	NA	NA
UHGV-0193623_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0193623_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0193623_16	UniRef90	UniRef90_UPI001898BB73	DNA cytosine methyltransferase	NA
UHGV-0193623_16	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0193623_16	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0193623_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0193623_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0193623_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0193623_17	eggNOG-mapper	1118054.CAGW01000096_gene4772	NA	NA
UHGV-0193623_18	PHROG	phrog_24368	NA	unknown function
UHGV-0193623_20	PHROG	phrog_24386	NA	unknown function
UHGV-0193623_20	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0193623_20	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0193623_20	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0193623_24	eggNOG-mapper	397291.C804_00917	NA	NA
UHGV-0193623_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0193623_26	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0193623_26	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0193623_28	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0193623_28	UniRef90	UniRef90_A0A649VCP3	MazG-like nucleotide pyrophosphohydrolase	NA
UHGV-0193623_28	eggNOG-mapper	1074308.G1JWL3_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0193623_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0193623_31	UniRef90	UniRef90_UPI0018985E32	NA	NA
UHGV-0193623_31	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0193623_31	Pfam	PF07374	NA	DUF1492
UHGV-0193623_31	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0193623_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0193623_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0193623_32	UniRef90	UniRef90_R5IDL4	Prophage LambdaBa04 Gp54	NA
UHGV-0193623_32	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0193623_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0193623_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0193623_33	PHROG	phrog_1066	NA	unknown function
UHGV-0193623_33	UniRef90	UniRef90_A0A7G5C3E9	P27 family phage terminase small subunit	NA
UHGV-0193623_33	eggNOG-mapper	290402.Cbei_0905	NA	NA
UHGV-0193623_33	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0193623_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0193623_34	UniRef90	UniRef90_UPI00189BE34B	terminase large subunit	NA
UHGV-0193623_34	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0193623_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0193623_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0193623_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0193623_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0193623_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0193623_35	UniRef90	UniRef90_UPI00189AE45D	phage portal protein	NA
UHGV-0193623_35	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0193623_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0193623_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0193623_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0193623_36	KOfam	K06904	NA	NA
UHGV-0193623_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0193623_36	UniRef90	UniRef90_UPI00189C5536	HK97 family phage prohead protease	NA
UHGV-0193623_36	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0193623_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0193623_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0193623_36	COG	COG3740	Phage head maturation protease	NA
UHGV-0193623_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0193623_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0193623_37	UniRef90	UniRef90_UPI001899FA80	phage major capsid protein	NA
UHGV-0193623_37	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0193623_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0193623_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0193623_37	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0193623_38	PHROG	phrog_5223	neck protein	connector
UHGV-0193623_38	UniRef90	UniRef90_UPI001A9AF385	DNA-packaging protein	NA
UHGV-0193623_38	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0193623_38	Structural annotation	TIGR01560	NA	NA
UHGV-0193623_39	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0193623_39	UniRef90	UniRef90_UPI00189900AB	phage head closure protein	NA
UHGV-0193623_39	eggNOG-mapper	1444310.JANV01000004_gene2678	head-tail adaptor	NA
UHGV-0193623_39	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0193623_39	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0193623_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0193623_40	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0193623_40	Structural annotation	PF05657	NA	NA
UHGV-0193623_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0193623_41	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0193623_41	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0193623_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0193623_41	Structural annotation	TIGR01725	NA	NA
UHGV-0193623_42	PHROG	phrog_88	major tail protein	tail
UHGV-0193623_42	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0193623_42	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0193623_42	COG	COG5492	NA	NA
UHGV-0193623_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0193623_43	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0193623_44	KOfam	K06675	SMC4; structural maintenance of chromosome 4	NA
UHGV-0193623_44	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0193623_44	UniRef90	UniRef90_UPI00189C4E6E	phage tail tape measure protein	NA
UHGV-0193623_44	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-0193623_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0193623_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0193623_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0193623_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0193623_45	PHROG	phrog_36410	NA	unknown function
UHGV-0193623_45	UniRef90	UniRef90_UPI00189A2D41	phage tail family protein	NA
UHGV-0193623_45	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0193623_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0193623_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0193623_45	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0193623_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0193623_46	UniRef90	UniRef90_UPI001A9C11C8	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0193623_46	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0193623_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0193623_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0193623_47	PHROG	phrog_1220	head protein	head and packaging
UHGV-0193623_47	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0193623_47	Structural annotation	PF20747	NA	NA