UHGV-0194878

Genome information

Genome length 38,036 bps

CDS count 57

Completeness 51.02% (medium-quality)

geNomad score 0.9619

Prediction confidence Confident

Genome information
Genome ID	UHGV-0194878
vOTU ID	vOTU-017053
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05827263_a1_ct31171_vs1@linear@Myoviridae__sp._ct5LO1
BioSample	SAMN05827263
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9619
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.14
Jumbo phage	No

Genome content
Genome length	38,036 bps
GC content	62.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.54%
Average CDS length	626.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0194878_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0194878_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0194878_2	UniRef90	UniRef90_A0A1Y4LLT1	LexA family transcriptional regulator	NA
UHGV-0194878_2	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0194878_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0194878_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0194878_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0194878_2	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0194878_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0194878_4	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0194878_4	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0194878_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0194878_4	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0194878_4	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0194878_5	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0194878_5	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0194878_7	Structural annotation	NF011240	NA	NA
UHGV-0194878_8	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0194878_8	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0194878_8	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0194878_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0194878_8	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0194878_9	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0194878_9	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0194878_9	UniRef90	UniRef90_G9YLP9	SF4 helicase domain-containing protein	NA
UHGV-0194878_9	eggNOG-mapper	742738.HMPREF9460_04048	NA	NA
UHGV-0194878_9	Pfam	PF13481	AAA domain	AAA_25
UHGV-0194878_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0194878_9	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0194878_10	PHROG	phrog_27610	NA	unknown function
UHGV-0194878_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0194878_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0194878_11	UniRef90	UniRef90_A0A096BC44	AAA_31 domain-containing protein	NA
UHGV-0194878_11	eggNOG-mapper	742738.HMPREF9460_04050	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0194878_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0194878_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0194878_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0194878_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0194878_12	PHROG	phrog_27290	NA	unknown function
UHGV-0194878_12	UniRef90	UniRef90_A0A6N3FXV0	Nucleoid occlusion protein	NA
UHGV-0194878_12	eggNOG-mapper	742738.HMPREF9460_04281	ParB-like nuclease domain	NA
UHGV-0194878_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0194878_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0194878_12	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0194878_13	PHROG	phrog_33866	NA	unknown function
UHGV-0194878_17	PHROG	phrog_25732	NA	unknown function
UHGV-0194878_18	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0194878_18	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0194878_18	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0194878_19	Structural annotation	NF000937	NA	NA
UHGV-0194878_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194878_20	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0194878_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0194878_21	UniRef90	UniRef90_A0A096AZ46	HTH cro/C1-type domain-containing protein	NA
UHGV-0194878_21	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0194878_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0194878_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0194878_21	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0194878_22	AcrCatalog	cluster_32378	NA	NA
UHGV-0194878_24	UniRef90	UniRef90_U2BZ19	NA	NA
UHGV-0194878_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0194878_25	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0194878_25	Structural annotation	PF01446	NA	NA
UHGV-0194878_26	UniRef90	UniRef90_UPI001C10554C	cysteine-rich KTR domain-containing protein	NA
UHGV-0194878_26	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0194878_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194878_27	UniRef90	UniRef90_R5Y3F5	HNH endonuclease	NA
UHGV-0194878_27	eggNOG-mapper	360398.A0ZS38_9CAUD	HNH endonuclease	NA
UHGV-0194878_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0194878_28	UniRef90	UniRef90_A0A2N2CMS5	Phage terminase small subunit P27 family	NA
UHGV-0194878_28	eggNOG-mapper	742738.HMPREF9460_04066	phage terminase, small subunit	NA
UHGV-0194878_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0194878_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0194878_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0194878_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0194878_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0194878_29	UniRef90	UniRef90_A0A096B044	Phage terminase, large subunit	NA
UHGV-0194878_29	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0194878_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0194878_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0194878_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0194878_29	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0194878_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0194878_31	UniRef90	UniRef90_A0A096AZ54	HK97 family phage portal protein	NA
UHGV-0194878_31	eggNOG-mapper	742738.HMPREF9460_04069	Phage portal protein	NA
UHGV-0194878_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0194878_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0194878_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0194878_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0194878_32	PHROG	phrog_16951	NA	unknown function
UHGV-0194878_32	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0194878_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0194878_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0194878_33	UniRef90	UniRef90_A0A096AZU3	HK97 family phage major capsid protein	NA
UHGV-0194878_33	eggNOG-mapper	742738.HMPREF9460_04071	phage major capsid protein, HK97 family	NA
UHGV-0194878_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0194878_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0194878_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0194878_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0194878_34	eggNOG-mapper	1567013.A0A0A7S0C9_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0194878_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0194878_35	PHROG	phrog_29848	NA	unknown function
UHGV-0194878_35	UniRef90	UniRef90_UPI0018989B1A	head-tail adaptor protein	NA
UHGV-0194878_35	eggNOG-mapper	742738.HMPREF9460_01370	NA	NA
UHGV-0194878_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0194878_36	eggNOG-mapper	1291050.JAGE01000001_gene2925	NA	NA
UHGV-0194878_36	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0194878_37	eggNOG-mapper	742738.HMPREF9460_00883	NA	NA
UHGV-0194878_37	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0194878_38	PHROG	phrog_1480	tail sheath	tail
UHGV-0194878_38	UniRef90	UniRef90_G9YLM7	Phage_sheath_1C domain-containing protein	NA
UHGV-0194878_38	eggNOG-mapper	742738.HMPREF9460_00884	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0194878_38	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0194878_38	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0194878_39	PHROG	phrog_365	tail protein	tail
UHGV-0194878_39	UniRef90	UniRef90_A0A174JBB0	Phage portal protein	NA
UHGV-0194878_39	eggNOG-mapper	742738.HMPREF9460_00890	Phage tail tube protein	NA
UHGV-0194878_39	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0194878_39	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0194878_40	eggNOG-mapper	1121334.KB911073_gene1866	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0194878_41	PHROG	phrog_33570	NA	unknown function
UHGV-0194878_41	UniRef90	UniRef90_A0A096DGF5	TMP_3 domain-containing protein	NA
UHGV-0194878_41	eggNOG-mapper	742738.HMPREF9460_00892	tape measure	NA
UHGV-0194878_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0194878_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0194878_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0194878_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0194878_42	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0194878_42	PHROG	phrog_380	endolysin	lysis
UHGV-0194878_42	UniRef90	UniRef90_A0A1Y4FGT2	LysM domain-containing protein	NA
UHGV-0194878_42	eggNOG-mapper	742738.HMPREF9460_04309	Lysin motif	NA
UHGV-0194878_42	Pfam	PF01476	LysM domain	LysM
UHGV-0194878_42	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0194878_42	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0194878_43	PHROG	phrog_400	tail protein	tail
UHGV-0194878_43	UniRef90	UniRef90_A0A0S2W5L1	Phage-like element PBSX protein xkdQ	NA
UHGV-0194878_43	eggNOG-mapper	742738.HMPREF9460_00895	NLP P60 protein	NA
UHGV-0194878_43	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0194878_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0194878_44	PHROG	phrog_33232	NA	unknown function
UHGV-0194878_44	UniRef90	UniRef90_A0A2U1B9L8	HicB-like protein involved in pilus formation	NA
UHGV-0194878_44	eggNOG-mapper	1118054.CAGW01000104_gene4617	HicB family	NA
UHGV-0194878_44	Pfam	PF05534	HicB family	HicB
UHGV-0194878_44	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0194878_44	Structural annotation	PF05534, NF041793, COG4226	NA	NA
UHGV-0194878_45	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0194878_45	UniRef90	UniRef90_A0A1Y4FKQ9	Addiction module toxin RelE	NA
UHGV-0194878_45	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0194878_45	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0194878_46	PHROG	phrog_28484	NA	unknown function
UHGV-0194878_47	PHROG	phrog_120	baseplate protein	tail
UHGV-0194878_47	UniRef90	UniRef90_G9YP57	Phage protein XkdS domain protein	NA
UHGV-0194878_47	eggNOG-mapper	742738.HMPREF9460_04275	NA	NA
UHGV-0194878_47	Pfam	PF10934	NA	DUF2634
UHGV-0194878_47	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0194878_47	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0194878_48	PHROG	phrog_6	baseplate protein	tail
UHGV-0194878_48	UniRef90	UniRef90_A0A096AXU8	Baseplate_J domain-containing protein	NA
UHGV-0194878_48	eggNOG-mapper	742738.HMPREF9460_04274	Baseplate J-like protein	NA
UHGV-0194878_48	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0194878_48	COG	COG3299	NA	NA
UHGV-0194878_48	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0194878_49	PHROG	phrog_521	tail protein	tail
UHGV-0194878_49	UniRef90	UniRef90_UPI00102FFF94	NA	NA
UHGV-0194878_49	eggNOG-mapper	742738.HMPREF9460_04273	NA	NA
UHGV-0194878_49	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0194878_49	COG	COG3778	NA	NA
UHGV-0194878_49	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0194878_50	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0194878_50	eggNOG-mapper	742738.HMPREF9460_03962	NA	NA
UHGV-0194878_51	PHROG	phrog_38707	NA	unknown function
UHGV-0194878_51	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0194878_51	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0194878_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0194878_52	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0194878_52	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-0194878_52	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0194878_53	PHROG	phrog_22773	NA	unknown function
UHGV-0194878_53	UniRef90	UniRef90_G9YP62	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-0194878_53	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0194878_54	PHROG	phrog_2310	NA	unknown function
UHGV-0194878_55	eggNOG-mapper	742738.HMPREF9460_03967	NA	NA
UHGV-0194878_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0194878_56	PHROG	phrog_18955	NA	unknown function
UHGV-0194878_56	UniRef90	UniRef90_A0A096CCQ9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0194878_56	eggNOG-mapper	742738.HMPREF9460_03968	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0194878_56	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0194878_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0194878_56	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0194878_56	Structural annotation	PF09992, PF01510, PF18342, NF008758, NF040678, COG5632, COG4632, COG4991	NA	NA
UHGV-0194878_57	PHROG	phrog_199	holin	lysis
UHGV-0194878_57	UniRef90	UniRef90_A0A4R2MCF7	Cph1 family holin	NA
UHGV-0194878_57	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0194878_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0194878_57	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0194878_57	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0194878_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA