UHGV-0195472

Genome information

vOTU vOTU-020065

Genome length 30,002 bps

CDS count 47

Completeness 85.91% (medium-quality)

geNomad score 0.9514

Prediction confidence Confident

Genome information
Genome ID	UHGV-0195472
vOTU ID	vOTU-020065
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05414935_a1_ct290343_vs1@Siphoviridae__sp._ctlFK1
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9514
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.32
Jumbo phage	No

Genome content
Genome length	30,002 bps
GC content	67.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.23%
Average CDS length	558.70 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195472_1	KOfam	K14059	int; integrase	NA
UHGV-0195472_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0195472_1	UniRef90	UniRef90_X8HVH7	Site-specific recombinase, phage integrase family	NA
UHGV-0195472_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0195472_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0195472_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0195472_2	UniRef90	UniRef90_UPI001956DFEA	Abi family protein	NA
UHGV-0195472_2	eggNOG-mapper	661087.HMPREF1008_01121	Abi-like protein	NA
UHGV-0195472_2	PADLOC	AbiD	AbiD	Abi
UHGV-0195472_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0195472_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0195472_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0195472_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0195472_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0195472_4	UniRef90	UniRef90_A0A413AQX7	XRE family transcriptional regulator	NA
UHGV-0195472_4	eggNOG-mapper	445975.COLSTE_01137	Peptidase S24-like	NA
UHGV-0195472_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0195472_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0195472_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0195472_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0195472_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0195472_5	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-0195472_5	eggNOG-mapper	1504822.CCNO01000015_gene589	SOS response	NA
UHGV-0195472_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0195472_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0195472_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0195472_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0195472_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0195472_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0195472_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0195472_11	UniRef90	UniRef90_UPI000E3CCC4C	single-stranded DNA-binding protein	NA
UHGV-0195472_11	eggNOG-mapper	1504822.CCNO01000008_gene2043	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0195472_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0195472_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0195472_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0195472_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0195472_11	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0195472_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0195472_12	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0195472_15	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0195472_17	KOfam	K06940	NA	NA
UHGV-0195472_17	PHROG	phrog_32498	NA	unknown function
UHGV-0195472_17	UniRef90	UniRef90_A0A7X9UBZ8	YkgJ family cysteine cluster protein	NA
UHGV-0195472_17	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0195472_17	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0195472_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0195472_18	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0195472_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0195472_20	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0195472_20	UniRef90	UniRef90_UPI000E3BC5A6	NA	NA
UHGV-0195472_20	Pfam	PF11753	NA	DUF3310
UHGV-0195472_20	Structural annotation	PF11753	NA	NA
UHGV-0195472_21	KOfam	K14059	int; integrase	NA
UHGV-0195472_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0195472_21	UniRef90	UniRef90_UPI000E3C8C88	site-specific integrase	NA
UHGV-0195472_21	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-0195472_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0195472_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0195472_21	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0195472_23	eggNOG-mapper	1125712.HMPREF1316_1526	NA	NA
UHGV-0195472_23	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0195472_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195472_25	UniRef90	UniRef90_UPI001E5D2252	HNH endonuclease	NA
UHGV-0195472_25	eggNOG-mapper	521003.COLINT_02336	HNH nucleases	NA
UHGV-0195472_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0195472_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0195472_25	Structural annotation	PF01844	NA	NA
UHGV-0195472_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0195472_27	UniRef90	UniRef90_UPI001305466D	ATP-binding protein	NA
UHGV-0195472_27	eggNOG-mapper	521095.Apar_0576	Terminase	NA
UHGV-0195472_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0195472_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0195472_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0195472_28	UniRef90	UniRef90_A0A3D1U9I6	Phage portal protein (Fragment)	NA
UHGV-0195472_28	eggNOG-mapper	521095.Apar_0577	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0195472_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0195472_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0195472_29	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0195472_29	UniRef90	UniRef90_R7BP20	CdiA_C domain-containing protein	NA
UHGV-0195472_29	eggNOG-mapper	521003.COLINT_02341	NA	NA
UHGV-0195472_30	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0195472_30	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0195472_30	eggNOG-mapper	521095.Apar_0579	NA	NA
UHGV-0195472_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0195472_31	UniRef90	UniRef90_A0A261EXY0	Head protein	NA
UHGV-0195472_31	eggNOG-mapper	1437610.BREU_1384	Phage capsid family	NA
UHGV-0195472_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0195472_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0195472_31	COG	COG0577	ABC-type antimicrobial peptide transport system, permease component	NA
UHGV-0195472_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0195472_33	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0195472_33	UniRef90	UniRef90_UPI00164FAC50	Gp19/Gp15/Gp42 family protein	NA
UHGV-0195472_33	eggNOG-mapper	521095.Apar_0581	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0195472_33	Pfam	PF09355	NA	Phage_Gp19
UHGV-0195472_33	Structural annotation	PF09355	NA	NA
UHGV-0195472_34	PHROG	phrog_501	head closure Hc1	connector
UHGV-0195472_34	UniRef90	UniRef90_A0A5C7ERG1	Head-tail adaptor protein	NA
UHGV-0195472_34	eggNOG-mapper	521003.COLINT_02346	NA	NA
UHGV-0195472_34	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0195472_35	PHROG	phrog_387	neck protein	connector
UHGV-0195472_36	PHROG	phrog_123	tail terminator	connector
UHGV-0195472_36	UniRef90	UniRef90_A0A2N0TKH2	NA	NA
UHGV-0195472_36	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0195472_36	Structural annotation	PF06141	NA	NA
UHGV-0195472_37	PHROG	phrog_117	major tail protein	tail
UHGV-0195472_37	UniRef90	UniRef90_A0A415JHM5	Phage tail protein	NA
UHGV-0195472_37	eggNOG-mapper	521003.COLINT_02349	domain, Protein	NA
UHGV-0195472_37	COG	COG5492	NA	NA
UHGV-0195472_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0195472_39	eggNOG-mapper	742742.HMPREF9452_01295	NA	NA
UHGV-0195472_39	Structural annotation	PF17318	NA	NA
UHGV-0195472_40	PHROG	phrog_17020	NA	unknown function
UHGV-0195472_40	UniRef90	UniRef90_A0A3G9K7T2	TMP_3 domain-containing protein	NA
UHGV-0195472_40	eggNOG-mapper	566552.BIFCAT_00862	Transglycosylase SLT domain	NA
UHGV-0195472_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0195472_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0195472_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0195472_41	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0195472_41	eggNOG-mapper	521095.Apar_0589	NA	NA
UHGV-0195472_41	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0195472_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0195472_42	UniRef90	UniRef90_UPI001C2424C5	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0195472_42	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0195472_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0195472_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0195472_43	Structural annotation	PF20622	NA	NA
UHGV-0195472_44	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0195472_44	UniRef90	UniRef90_A0A345AR84	Tail fiber protein	NA
UHGV-0195472_44	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0195472_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0195472_44	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0195472_45	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0195472_45	PHROG	phrog_819	tail protein	tail
UHGV-0195472_45	UniRef90	UniRef90_UPI0011063329	collagen-like protein	NA
UHGV-0195472_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0195472_46	eggNOG-mapper	521095.Apar_0590	NA	NA
UHGV-0195472_47	PHROG	phrog_9994	NA	unknown function
UHGV-0195472_47	UniRef90	UniRef90_UPI00189FD7EF	RICIN domain-containing protein	NA
UHGV-0195472_47	eggNOG-mapper	521095.Apar_0592	NA	NA
UHGV-0195472_47	Structural annotation	PF20747	NA	NA