UHGV-0195554

Genome information

Genome length 35,757 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9512

Prediction confidence Confident

Genome information
Genome ID	UHGV-0195554
vOTU ID	vOTU-067247
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN01779870_a1_ct8879_vs1@linear@Siphoviridae__sp._ctz5E1
BioSample	SAMN01779870
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9512
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.76
Jumbo phage	No

Genome content
Genome length	35,757 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.08%
Average CDS length	703.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195554_1	PHROG	phrog_3675	NA	unknown function
UHGV-0195554_1	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0195554_1	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-0195554_1	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0195554_1	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0195554_2	eggNOG-mapper	568816.Acin_1817	NA	NA
UHGV-0195554_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0195554_3	PHROG	phrog_894	endolysin	lysis
UHGV-0195554_3	UniRef90	UniRef90_R5BE69	Peptidase M15A	NA
UHGV-0195554_3	eggNOG-mapper	350688.Clos_1309	Peptidase M15A	NA
UHGV-0195554_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0195554_3	COG	COG3108	NA	NA
UHGV-0195554_3	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0195554_6	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0195554_7	Structural annotation	PF12245, TIGR04183	NA	NA
UHGV-0195554_8	Structural annotation	PF14301	NA	NA
UHGV-0195554_9	PHROG	phrog_13336	NA	unknown function
UHGV-0195554_9	eggNOG-mapper	568816.Acin_1904	NA	NA
UHGV-0195554_10	eggNOG-mapper	568816.Acin_1226	NA	NA
UHGV-0195554_10	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0195554_11	UniRef90	UniRef90_A0A7X7U7G6	Phage tail protein	NA
UHGV-0195554_11	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0195554_11	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0195554_12	PHROG	phrog_12798	NA	unknown function
UHGV-0195554_12	UniRef90	UniRef90_R5ARS7	Putative tail length tape measure protein	NA
UHGV-0195554_12	eggNOG-mapper	457415.HMPREF1006_00474	tape measure	NA
UHGV-0195554_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0195554_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0195554_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0195554_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0195554_14	PHROG	phrog_2115	tail protein	tail
UHGV-0195554_14	Structural annotation	PF11836	NA	NA
UHGV-0195554_15	PHROG	phrog_1407	major tail protein	tail
UHGV-0195554_15	UniRef90	UniRef90_R6I4H1	Phage major tail protein TP901-1 family	NA
UHGV-0195554_15	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0195554_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0195554_15	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0195554_16	PHROG	phrog_176	tail terminator	connector
UHGV-0195554_16	Structural annotation	PF16807	NA	NA
UHGV-0195554_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0195554_17	UniRef90	UniRef90_UPI000F0C5A82	HK97 gp10 family phage protein	NA
UHGV-0195554_17	eggNOG-mapper	1262914.BN533_00193	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0195554_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0195554_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0195554_17	COG	COG5005	NA	NA
UHGV-0195554_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0195554_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0195554_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0195554_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0195554_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0195554_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0195554_19	UniRef90	UniRef90_UPI0019823240	head-tail connector protein	NA
UHGV-0195554_19	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0195554_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0195554_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0195554_19	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0195554_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0195554_20	UniRef90	UniRef90_UPI000F0C831E	phage major capsid protein	NA
UHGV-0195554_20	eggNOG-mapper	1121271.AUCM01000008_gene3245	phage major capsid protein, HK97	NA
UHGV-0195554_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0195554_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0195554_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0195554_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0195554_21	KOfam	K06904	NA	NA
UHGV-0195554_21	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0195554_21	UniRef90	UniRef90_UPI000F0CB78B	HK97 family phage prohead protease	NA
UHGV-0195554_21	eggNOG-mapper	457415.HMPREF1006_02476	Caudovirus prohead serine protease	NA
UHGV-0195554_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0195554_21	COG	COG3087	Cell division protein FtsN	NA
UHGV-0195554_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0195554_22	UniRef90	UniRef90_A0A7X6ZHF9	Phage portal protein	NA
UHGV-0195554_22	eggNOG-mapper	1286171.EAL2_c19660	Phage portal protein	NA
UHGV-0195554_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0195554_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0195554_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0195554_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0195554_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0195554_23	UniRef90	UniRef90_R6J449	Putative terminase large subunit	NA
UHGV-0195554_23	eggNOG-mapper	1262914.BN533_00200	terminase, large subunit	NA
UHGV-0195554_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0195554_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0195554_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0195554_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0195554_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0195554_24	UniRef90	UniRef90_A0A7X9I6W6	Phage terminase small subunit P27 family	NA
UHGV-0195554_24	eggNOG-mapper	1124578.H0USW2_9CAUD	Phage terminase, small subunit	NA
UHGV-0195554_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0195554_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0195554_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0195554_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195554_25	UniRef90	UniRef90_R6IEU0	Holin protein	NA
UHGV-0195554_25	eggNOG-mapper	1262914.BN533_00202	HNH nucleases	NA
UHGV-0195554_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0195554_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0195554_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0195554_26	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0195554_26	UniRef90	UniRef90_UPI001C060AA3	NA	NA
UHGV-0195554_26	eggNOG-mapper	484770.UFO1_1680	NA	NA
UHGV-0195554_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0195554_27	PHROG	phrog_38815	NA	unknown function
UHGV-0195554_28	PHROG	phrog_35896	NA	unknown function
UHGV-0195554_29	PHROG	phrog_36825	NA	unknown function
UHGV-0195554_29	UniRef90	UniRef90_A0A2A9CJA6	DnaD/phage-associated family protein	NA
UHGV-0195554_29	eggNOG-mapper	1151292.QEW_3765	DnaD domain protein	NA
UHGV-0195554_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0195554_29	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0195554_30	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0195554_30	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0195554_30	UniRef90	UniRef90_R6IEU2	DNA polymerase III subunit beta	NA
UHGV-0195554_30	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0195554_30	Structural annotation	PF02768, PF00712, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0195554_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0195554_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0195554_31	UniRef90	UniRef90_A0A3G9HAR8	Single-stranded DNA-binding protein	NA
UHGV-0195554_31	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0195554_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0195554_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0195554_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0195554_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0195554_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0195554_33	Structural annotation	NF007260	NA	NA
UHGV-0195554_34	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0195554_37	PHROG	phrog_16447	NA	unknown function
UHGV-0195554_37	UniRef90	UniRef90_A0A357Y3I5	NA	NA
UHGV-0195554_37	eggNOG-mapper	768486.EHR_00810	NA	NA
UHGV-0195554_37	Pfam	PF10083	NA	DUF2321
UHGV-0195554_37	COG	COG4306	NA	NA
UHGV-0195554_37	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0195554_40	UniRef90	UniRef90_A0A3A9EJD0	Helix-turn-helix domain-containing protein	NA
UHGV-0195554_40	eggNOG-mapper	411468.CLOSCI_00580	BetR domain	NA
UHGV-0195554_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0195554_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0195554_41	UniRef90	UniRef90_A0A642A549	Helix-turn-helix transcriptional regulator	NA
UHGV-0195554_41	eggNOG-mapper	411468.CLOSCI_00581	helix-turn-helix	NA
UHGV-0195554_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0195554_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0195554_41	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0195554_43	eggNOG-mapper	511680.BUTYVIB_00291	NA	NA
UHGV-0195554_44	eggNOG-mapper	1121342.AUCO01000010_gene2251	NA	NA
UHGV-0195554_45	Pfam	PF09509	NA	Hypoth_Ymh
UHGV-0195554_46	eggNOG-mapper	1501230.ET33_22815	NA	NA
UHGV-0195554_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0195554_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0195554_47	UniRef90	UniRef90_A0A1Y4B4X9	DNA integration/recombination protein	NA
UHGV-0195554_47	eggNOG-mapper	411483.FAEPRAA2165_02542	NA	NA
UHGV-0195554_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0195554_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-0195554_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0195554_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0195554_47	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0195554_48	KOfam	K03327	TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family	NA
UHGV-0195554_48	PHROG	phrog_6241	NA	unknown function
UHGV-0195554_48	UniRef90	UniRef90_R6HDU9	Mate efflux family protein	NA
UHGV-0195554_48	eggNOG-mapper	1262915.BN574_00014	Mate efflux family protein	NA
UHGV-0195554_48	Pfam	PF01554	MatE	MatE
UHGV-0195554_48	NCBIFam	TIGR00797.1	MATE family efflux transporter	NA
UHGV-0195554_48	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0195554_48	Structural annotation	PF03023, MF_00400, NF041801, COG0534	NA	NA