UHGV-0195562

Genome information

vOTU vOTU-020066

Genome length 37,540 bps

CDS count 59

Completeness 84.27% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0195562
vOTU ID	vOTU-020066
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00792036_a1_ct52367_vs1@linear@Siphoviridae__sp._ctNbt1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	85.82
Jumbo phage	No

Genome content
Genome length	37,540 bps
GC content	47.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.81%
Average CDS length	574.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195562_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0195562_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0195562_1	UniRef90	UniRef90_A0A6L6TNB8	Bro-N domain-containing protein	NA
UHGV-0195562_1	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0195562_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0195562_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0195562_1	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0195562_2	UniRef90	UniRef90_UPI001354345B	helix-turn-helix domain-containing protein	NA
UHGV-0195562_2	eggNOG-mapper	706434.HMPREF9429_00399	Helix-turn-helix domain	NA
UHGV-0195562_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0195562_2	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0195562_4	PHROG	phrog_14367	NA	unknown function
UHGV-0195562_4	UniRef90	UniRef90_H1CYZ6	LysM domain-containing protein	NA
UHGV-0195562_4	eggNOG-mapper	1128111.HMPREF0870_00383	LysM domain	NA
UHGV-0195562_4	Pfam	PF01476	LysM domain	LysM
UHGV-0195562_4	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0195562_4	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0195562_11	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0195562_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195562_11	UniRef90	UniRef90_UPI000568ADB0	NA	NA
UHGV-0195562_11	eggNOG-mapper	742743.HMPREF9453_00580	NA	NA
UHGV-0195562_11	Pfam	PF10926	NA	DUF2800
UHGV-0195562_11	COG	COG2887	RecB family exonuclease	NA
UHGV-0195562_11	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0195562_12	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0195562_12	UniRef90	UniRef90_UPI0005667E35	NA	NA
UHGV-0195562_12	eggNOG-mapper	742743.HMPREF9453_00579	NA	NA
UHGV-0195562_12	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0195562_12	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0195562_13	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0195562_13	UniRef90	UniRef90_UPI001EF4F24F	virulence-associated E family protein	NA
UHGV-0195562_13	eggNOG-mapper	742743.HMPREF9453_00578	Virulence-associated protein E	NA
UHGV-0195562_13	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0195562_13	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0195562_13	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0195562_14	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195562_14	UniRef90	UniRef90_H1CYY9	VRR-NUC domain-containing protein	NA
UHGV-0195562_14	eggNOG-mapper	742743.HMPREF9453_00577	VRR_NUC	NA
UHGV-0195562_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0195562_14	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0195562_15	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0195562_15	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0195562_15	UniRef90	UniRef90_H1CYY8	Helicase ATP-binding domain-containing protein	NA
UHGV-0195562_15	eggNOG-mapper	742743.HMPREF9453_00576	SNF2 family	NA
UHGV-0195562_15	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0195562_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0195562_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0195562_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0195562_15	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0195562_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0195562_17	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0195562_17	Structural annotation	PF07374, NF005248	NA	NA
UHGV-0195562_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0195562_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0195562_18	UniRef90	UniRef90_A0A1G5VI43	Phage terminase small subunit	NA
UHGV-0195562_18	eggNOG-mapper	1111454.HMPREF1250_0268	DNA packaging	NA
UHGV-0195562_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0195562_18	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0195562_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0195562_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0195562_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0195562_19	UniRef90	UniRef90_UPI001D088A8F	PBSX family phage terminase large subunit	NA
UHGV-0195562_19	eggNOG-mapper	1321779.HMPREF1984_01311	Phage terminase, large subunit, PBSX family	NA
UHGV-0195562_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0195562_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0195562_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0195562_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0195562_19	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0195562_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0195562_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0195562_20	UniRef90	UniRef90_A0A1G5VK25	Phage portal protein, SPP1 family	NA
UHGV-0195562_20	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0195562_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0195562_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0195562_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0195562_21	UniRef90	UniRef90_A0A1G5VIC0	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0195562_21	eggNOG-mapper	1042156.CXIVA_01840	Phage Mu protein F like protein	NA
UHGV-0195562_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0195562_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0195562_21	COG	COG2369	NA	NA
UHGV-0195562_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0195562_22	eggNOG-mapper	888060.HMPREF9081_0443	self proteolysis	NA
UHGV-0195562_22	Pfam	PF14021	Tuberculosis necrotizing toxin	TNT
UHGV-0195562_22	COG	COG3209	NA	NA
UHGV-0195562_23	Structural annotation	PF15597	NA	NA
UHGV-0195562_26	PHROG	phrog_3675	NA	unknown function
UHGV-0195562_26	UniRef90	UniRef90_UPI00193B9BB4	dihydrolipoyl dehydrogenase	NA
UHGV-0195562_26	eggNOG-mapper	1122173.AXVL01000018_gene435	YjcQ protein	NA
UHGV-0195562_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0195562_26	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0195562_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0195562_27	UniRef90	UniRef90_A0A1G5VID4	Phage minor structural protein GP20	NA
UHGV-0195562_27	eggNOG-mapper	699218.HMPREF0889_1452	COG NOG36366 non supervised orthologous group	NA
UHGV-0195562_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0195562_27	Structural annotation	PF06810	NA	NA
UHGV-0195562_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0195562_28	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0195562_28	eggNOG-mapper	706434.HMPREF9429_00525	NA	NA
UHGV-0195562_28	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0195562_29	Structural annotation	PF05135	NA	NA
UHGV-0195562_30	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0195562_30	UniRef90	UniRef90_UPI00156BD762	NA	NA
UHGV-0195562_30	eggNOG-mapper	1123511.KB905868_gene179	NA	NA
UHGV-0195562_30	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0195562_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0195562_31	UniRef90	UniRef90_A0A1G5VIR7	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0195562_31	eggNOG-mapper	1123511.KB905868_gene178	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0195562_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0195562_31	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0195562_32	PHROG	phrog_525	NA	unknown function
UHGV-0195562_32	eggNOG-mapper	1123511.KB905868_gene177	NA	NA
UHGV-0195562_32	Pfam	PF20765	NA	DUF6838
UHGV-0195562_32	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0195562_33	PHROG	phrog_966	NA	unknown function
UHGV-0195562_34	PHROG	phrog_279	tail sheath	tail
UHGV-0195562_34	UniRef90	UniRef90_A0A1G5VIV8	Phage tail sheath protein	NA
UHGV-0195562_34	eggNOG-mapper	1123511.KB905868_gene175	Phage tail sheath C-terminal domain	NA
UHGV-0195562_34	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0195562_34	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0195562_34	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0195562_34	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0195562_35	PHROG	phrog_365	tail protein	tail
UHGV-0195562_35	UniRef90	UniRef90_A0A1G5VIX0	Phage tail tube protein	NA
UHGV-0195562_35	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0195562_35	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0195562_35	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0195562_36	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0195562_36	UniRef90	UniRef90_A0A1G5VIL7	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0195562_36	eggNOG-mapper	1123511.KB905868_gene173	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0195562_36	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0195562_36	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0195562_37	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0195562_37	UniRef90	UniRef90_A0A1G5VKZ0	Tape measure domain-containing protein	NA
UHGV-0195562_37	eggNOG-mapper	1123511.KB905868_gene171	tape measure	NA
UHGV-0195562_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0195562_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0195562_37	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0195562_37	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0195562_38	PHROG	phrog_380	endolysin	lysis
UHGV-0195562_38	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0195562_38	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0195562_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0195562_38	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0195562_39	PHROG	phrog_400	tail protein	tail
UHGV-0195562_39	UniRef90	UniRef90_UPI001E40E76A	hydrolase	NA
UHGV-0195562_39	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0195562_39	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0195562_39	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0195562_40	PHROG	phrog_579	NA	unknown function
UHGV-0195562_40	UniRef90	UniRef90_UPI000370C201	NA	NA
UHGV-0195562_40	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0195562_40	Pfam	PF10844	NA	DUF2577
UHGV-0195562_40	Structural annotation	PF10844	NA	NA
UHGV-0195562_41	PHROG	phrog_120	baseplate protein	tail
UHGV-0195562_41	UniRef90	UniRef90_UPI00055FD191	NA	NA
UHGV-0195562_41	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0195562_41	Pfam	PF10934	NA	DUF2634
UHGV-0195562_41	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0195562_41	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0195562_42	PHROG	phrog_6	baseplate protein	tail
UHGV-0195562_42	UniRef90	UniRef90_UPI001D090E33	baseplate J/gp47 family protein	NA
UHGV-0195562_42	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0195562_42	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0195562_42	COG	COG3299	NA	NA
UHGV-0195562_42	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0195562_43	PHROG	phrog_521	tail protein	tail
UHGV-0195562_43	UniRef90	UniRef90_UPI001D07DFAB	YmfQ family protein	NA
UHGV-0195562_43	eggNOG-mapper	1195236.CTER_3988	NA	NA
UHGV-0195562_43	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0195562_43	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0195562_43	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0195562_44	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0195562_44	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-0195562_44	eggNOG-mapper	913865.DOT_2886	tail collar domain protein	NA
UHGV-0195562_44	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0195562_44	Structural annotation	PF12571	NA	NA
UHGV-0195562_45	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0195562_45	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0195562_47	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0195562_47	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0195562_47	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0195562_49	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0195562_51	UniRef90	UniRef90_UPI001C3AF704	Recombinase XerC	NA
UHGV-0195562_51	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0195562_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0195562_54	PHROG	phrog_4105	NA	unknown function
UHGV-0195562_54	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0195562_56	KOfam	K07273	acm; lysozyme	NA
UHGV-0195562_56	PHROG	phrog_291	endolysin	lysis
UHGV-0195562_56	UniRef90	UniRef90_E4LA36	Glycosyl hydrolase family 25	NA
UHGV-0195562_56	eggNOG-mapper	910314.HMPREF9220_1079	Glycosyl hydrolases family 25	NA
UHGV-0195562_56	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0195562_56	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0195562_56	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0195562_59	PHROG	phrog_15041	NA	unknown function
UHGV-0195562_59	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0195562_59	Structural annotation	PF10827	NA	NA