UHGV-0196166

Genome information

Genome length 35,511 bps

CDS count 62

Completeness 84.43% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0196166
vOTU ID	vOTU-022444
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781737_a1_ct84275_vs1@Siphoviridae__sp._ct3qU1
BioSample	SAMN09781737
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.84
Jumbo phage	No

Genome content
Genome length	35,511 bps
GC content	53.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.79%
Average CDS length	524.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196166_2	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0196166_2	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0196166_2	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0196166_2	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0196166_3	PHROG	phrog_38832	NA	unknown function
UHGV-0196166_3	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0196166_4	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0196166_5	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0196166_5	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0196166_6	PHROG	phrog_27610	NA	unknown function
UHGV-0196166_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0196166_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0196166_7	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0196166_7	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0196166_7	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0196166_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0196166_7	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0196166_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0196166_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196166_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0196166_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0196166_11	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0196166_11	UniRef90	UniRef90_UPI001BB47464	NA	NA
UHGV-0196166_11	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0196166_11	Pfam	PF06356	NA	DUF1064
UHGV-0196166_11	Structural annotation	PF06356	NA	NA
UHGV-0196166_12	PHROG	phrog_9804	NA	unknown function
UHGV-0196166_12	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0196166_12	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0196166_12	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0196166_12	Structural annotation	PF11417	NA	NA
UHGV-0196166_13	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0196166_13	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0196166_13	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0196166_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0196166_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0196166_13	Structural annotation	PF14297	NA	NA
UHGV-0196166_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0196166_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196166_15	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0196166_15	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0196166_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0196166_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0196166_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0196166_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0196166_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0196166_16	PHROG	phrog_7566	NA	unknown function
UHGV-0196166_16	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0196166_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0196166_17	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0196166_17	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0196166_17	Structural annotation	PF05772	NA	NA
UHGV-0196166_18	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0196166_18	Structural annotation	TIGR01913	NA	NA
UHGV-0196166_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0196166_19	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0196166_19	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0196166_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0196166_19	Structural annotation	PF05565	NA	NA
UHGV-0196166_20	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0196166_21	PHROG	phrog_22529	NA	unknown function
UHGV-0196166_21	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0196166_21	eggNOG-mapper	1298920.KI911353_gene568	3D domain	NA
UHGV-0196166_21	Pfam	PF06725	3D domain	3D
UHGV-0196166_21	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0196166_21	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0196166_23	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0196166_23	UniRef90	UniRef90_UPI0018A9228F	Rha family transcriptional regulator	NA
UHGV-0196166_23	eggNOG-mapper	1203606.HMPREF1526_00304	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0196166_23	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0196166_23	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0196166_23	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0196166_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0196166_24	UniRef90	UniRef90_UPI001EFB6210	helix-turn-helix domain-containing protein	NA
UHGV-0196166_24	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0196166_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196166_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0196166_24	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0196166_28	KOfam	K14059	int; integrase	NA
UHGV-0196166_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0196166_28	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0196166_28	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0196166_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0196166_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0196166_28	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0196166_29	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0196166_30	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0196166_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0196166_32	PHROG	phrog_16490	NA	unknown function
UHGV-0196166_33	PHROG	phrog_22984	NA	unknown function
UHGV-0196166_37	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0196166_37	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0196166_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196166_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0196166_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0196166_38	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0196166_38	PHROG	phrog_6523	endolysin	lysis
UHGV-0196166_38	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0196166_38	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0196166_38	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0196166_38	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0196166_38	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0196166_39	PHROG	phrog_13256	NA	unknown function
UHGV-0196166_39	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0196166_42	PHROG	phrog_27545	NA	unknown function
UHGV-0196166_42	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0196166_42	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0196166_42	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0196166_42	Structural annotation	PF16170	NA	NA
UHGV-0196166_43	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0196166_43	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0196166_43	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0196166_43	Pfam	PF19789	NA	DUF6273
UHGV-0196166_43	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0196166_43	Structural annotation	PF19789, PF18707, NF041825, COG3330	NA	NA
UHGV-0196166_44	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0196166_44	PHROG	phrog_21962	tail protein	tail
UHGV-0196166_44	UniRef90	UniRef90_A0A858MRS5	Putative tail fiber protein	NA
UHGV-0196166_44	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0196166_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0196166_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0196166_46	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0196166_47	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0196166_47	Structural annotation	PF14594	NA	NA
UHGV-0196166_48	PHROG	phrog_32308	NA	unknown function
UHGV-0196166_48	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0196166_48	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0196166_48	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0196166_49	PHROG	phrog_1194	NA	unknown function
UHGV-0196166_49	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0196166_49	Pfam	PF20458	NA	DUF6711
UHGV-0196166_49	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0196166_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0196166_50	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0196166_50	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0196166_50	COG	COG1511	NA	NA
UHGV-0196166_50	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0196166_51	PHROG	phrog_806	NA	unknown function
UHGV-0196166_51	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0196166_51	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0196166_51	Pfam	PF11611	NA	DUF4352
UHGV-0196166_51	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0196166_52	PHROG	phrog_706	NA	unknown function
UHGV-0196166_52	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0196166_52	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0196166_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0196166_52	Structural annotation	PF06854	NA	NA
UHGV-0196166_53	PHROG	phrog_11299	NA	unknown function
UHGV-0196166_53	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0196166_53	Structural annotation	PF10666	NA	NA
UHGV-0196166_54	PHROG	phrog_3099	NA	unknown function
UHGV-0196166_54	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0196166_54	Structural annotation	TIGR02126	NA	NA
UHGV-0196166_55	PHROG	phrog_3266	tail completion	connector
UHGV-0196166_55	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0196166_56	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0196166_56	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0196166_56	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0196166_56	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0196166_56	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0196166_57	PHROG	phrog_3366	NA	unknown function
UHGV-0196166_57	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0196166_57	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0196166_58	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0196166_58	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0196166_59	PHROG	phrog_10	major head protein	head and packaging
UHGV-0196166_59	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0196166_59	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0196166_59	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0196166_59	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0196166_59	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0196166_59	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0196166_60	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0196166_60	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0196166_60	Structural annotation	PF06810	NA	NA
UHGV-0196166_61	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0196166_61	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0196166_61	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0196166_61	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0196166_61	COG	COG2369	NA	NA
UHGV-0196166_61	Structural annotation	PF06152	NA	NA
UHGV-0196166_62	PHROG	phrog_8680	NA	unknown function
UHGV-0196166_62	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0196166_62	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0196166_62	Pfam	PF14386	NA	DUF4417
UHGV-0196166_62	Structural annotation	PF14386	NA	NA