UHGV-0196184

Genome information

vOTU vOTU-019478

Genome length 37,454 bps

CDS count 53

Completeness 53.78% (medium-quality)

geNomad score 0.9727

Prediction confidence Confident

Genome information
Genome ID	UHGV-0196184
vOTU ID	vOTU-019478
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05827224_a1_ct2186@circular@Siphoviridae__sp._ct1Cd186
BioSample	SAMN05827224
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9727
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.5
Jumbo phage	No

Genome content
Genome length	37,454 bps
GC content	41.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.99%
Average CDS length	631.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196184_1	UniRef90	UniRef90_A0A165NQY1	Prophage Lp1 protein 32	NA
UHGV-0196184_1	eggNOG-mapper	220668.lp_0655	NA	NA
UHGV-0196184_2	UniRef90	UniRef90_A0A1I9KKE0	NAD-dependent DNA ligase Zn finger domain protein	NA
UHGV-0196184_3	PHROG	phrog_98	NA	unknown function
UHGV-0196184_3	UniRef90	UniRef90_A0A8A8BZG0	YopX domain-containing protein	NA
UHGV-0196184_3	eggNOG-mapper	220668.lp_0653	YopX protein	NA
UHGV-0196184_3	Pfam	PF09643	YopX protein	YopX
UHGV-0196184_3	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0196184_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0196184_5	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0196184_5	UniRef90	UniRef90_A0A1E3KRC3	Methyltransf_11 domain-containing protein	NA
UHGV-0196184_5	eggNOG-mapper	52979.O03918_9CAUD	methyltransferase activity	NA
UHGV-0196184_5	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0196184_5	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0196184_5	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0196184_6	PHROG	phrog_32922	NA	unknown function
UHGV-0196184_6	UniRef90	UniRef90_A0A806J3N0	Prophage P2a protein 25	NA
UHGV-0196184_6	eggNOG-mapper	1400520.LFAB_09175	NA	NA
UHGV-0196184_8	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0196184_8	UniRef90	UniRef90_A0A151G8Q8	Helicase	NA
UHGV-0196184_8	eggNOG-mapper	1423755.BAML01000004_gene401	Virulence-associated protein E	NA
UHGV-0196184_8	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0196184_8	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0196184_8	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-0196184_9	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0196184_9	UniRef90	UniRef90_A0A162EDE4	Phage replication protein	NA
UHGV-0196184_9	eggNOG-mapper	1423815.BACR01000010_gene574	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0196184_9	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0196184_9	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0196184_9	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0196184_9	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0196184_10	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196184_10	UniRef90	UniRef90_UPI0012E83695	NA	NA
UHGV-0196184_10	eggNOG-mapper	349123.Lreu23DRAFT_4227	NA	NA
UHGV-0196184_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0196184_11	UniRef90	UniRef90_A0A0R2DCC0	Phage NTP-binding protein	NA
UHGV-0196184_11	eggNOG-mapper	1423815.BACR01000010_gene577	AAA domain	NA
UHGV-0196184_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0196184_11	COG	COG2887	RecB family exonuclease	NA
UHGV-0196184_11	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0196184_12	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0196184_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0196184_12	UniRef90	UniRef90_A0A6P1PEN4	DNA repair helicase RadD	NA
UHGV-0196184_12	eggNOG-mapper	1567453.A0A0A1ENT0_9CAUD	helicase activity	NA
UHGV-0196184_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0196184_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0196184_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0196184_12	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0196184_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196184_13	UniRef90	UniRef90_UPI000D7C64DB	NUMOD4 domain-containing protein	NA
UHGV-0196184_13	eggNOG-mapper	537874.B3GVX7_9CAUD	HNH endonuclease	NA
UHGV-0196184_13	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0196184_13	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0196184_13	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0196184_13	Structural annotation	PF07463, PF20987	NA	NA
UHGV-0196184_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0196184_14	UniRef90	UniRef90_A0A151G8H9	RNA helicase	NA
UHGV-0196184_14	eggNOG-mapper	797515.HMPREF9103_02419	Siphovirus Gp157	NA
UHGV-0196184_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0196184_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0196184_15	PHROG	phrog_22687	NA	unknown function
UHGV-0196184_16	PHROG	phrog_26235	NA	unknown function
UHGV-0196184_16	UniRef90	UniRef90_A0A2P0ZLB1	Glycyl-tRNA synthetase beta chain	NA
UHGV-0196184_17	PHROG	phrog_15098	NA	unknown function
UHGV-0196184_17	UniRef90	UniRef90_A0A151G9F2	NA	NA
UHGV-0196184_18	UniRef90	UniRef90_UPI0015566350	helix-turn-helix domain-containing protein	NA
UHGV-0196184_18	eggNOG-mapper	1211035.CD30_17740	NA	NA
UHGV-0196184_18	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-0196184_19	PHROG	phrog_5118	NA	unknown function
UHGV-0196184_20	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196184_20	UniRef90	UniRef90_A0A0M0CIE4	Antirepressor	NA
UHGV-0196184_20	eggNOG-mapper	1302286.BAOT01000007_gene584	NA	NA
UHGV-0196184_20	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0196184_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0196184_21	UniRef90	UniRef90_A0A2S3U3K1	HTH cro/C1-type domain-containing protein	NA
UHGV-0196184_21	eggNOG-mapper	1158610.UC3_02386	Helix-turn-helix XRE-family like proteins	NA
UHGV-0196184_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196184_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0196184_21	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0196184_22	PHROG	phrog_87	metallo-protease	other
UHGV-0196184_22	UniRef90	UniRef90_UPI001CDC800A	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0196184_22	eggNOG-mapper	638301.HMPREF0444_1539	IrrE N-terminal-like domain	NA
UHGV-0196184_22	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0196184_22	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0196184_25	KOfam	K14059	int; integrase	NA
UHGV-0196184_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0196184_25	UniRef90	UniRef90_A0A2P0ZL94	Integrase	NA
UHGV-0196184_25	eggNOG-mapper	1158609.I586_00043	Belongs to the 'phage' integrase family	NA
UHGV-0196184_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0196184_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0196184_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0196184_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0196184_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0196184_26	PHROG	phrog_291	endolysin	lysis
UHGV-0196184_26	UniRef90	UniRef90_A0A8F8Y936	Lysin	NA
UHGV-0196184_26	eggNOG-mapper	1400520.LFAB_05325	Glycosyl hydrolases family 25	NA
UHGV-0196184_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0196184_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0196184_26	Structural annotation	PF01183, NF004283, COG3757	NA	NA
UHGV-0196184_27	PHROG	phrog_1129	holin	lysis
UHGV-0196184_27	UniRef90	UniRef90_UPI0010F4BB18	lysis protein	NA
UHGV-0196184_27	eggNOG-mapper	1329250.WOSG25_260100	Bacteriophage A118-like holin, Hol118	NA
UHGV-0196184_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0196184_29	PHROG	phrog_11342	NA	unknown function
UHGV-0196184_29	eggNOG-mapper	1400520.LFAB_05310	NA	NA
UHGV-0196184_30	PHROG	phrog_19261	NA	unknown function
UHGV-0196184_31	PHROG	phrog_1401	NA	unknown function
UHGV-0196184_31	UniRef90	UniRef90_UPI00106586E6	NA	NA
UHGV-0196184_31	eggNOG-mapper	60520.HR47_13405	NA	NA
UHGV-0196184_31	Pfam	PF07761	NA	DUF1617
UHGV-0196184_31	Structural annotation	PF07761	NA	NA
UHGV-0196184_32	PHROG	phrog_1330	tail protein	tail
UHGV-0196184_32	UniRef90	UniRef90_A0A806IEK2	NA	NA
UHGV-0196184_32	eggNOG-mapper	60520.HR47_13410	DNA recombination	NA
UHGV-0196184_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0196184_32	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0196184_32	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0196184_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0196184_33	UniRef90	UniRef90_A0A165P5J4	NA	NA
UHGV-0196184_33	eggNOG-mapper	46256.BBIK01000004_gene702	Phage tail protein	NA
UHGV-0196184_33	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0196184_34	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0196184_34	UniRef90	UniRef90_A0A165P5K0	Phage tail length tape-measure protein	NA
UHGV-0196184_34	eggNOG-mapper	1122147.AUEH01000027_gene2737	Phage tail tape measure protein TP901	NA
UHGV-0196184_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0196184_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0196184_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0196184_34	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0196184_35	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0196184_35	UniRef90	UniRef90_A0A2P0ZLF3	ATP-dependent DNA helicase	NA
UHGV-0196184_35	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0196184_36	PHROG	phrog_88	major tail protein	tail
UHGV-0196184_36	UniRef90	UniRef90_A0A165DF72	Phage major tail protein	NA
UHGV-0196184_36	eggNOG-mapper	1122147.AUEH01000027_gene2740	Phage tail tube protein	NA
UHGV-0196184_36	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0196184_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0196184_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0196184_37	PHROG	phrog_78	tail terminator	connector
UHGV-0196184_37	UniRef90	UniRef90_A0A7Z9DHX8	Gp10 family protein	NA
UHGV-0196184_37	eggNOG-mapper	1140001.I571_01750	NA	NA
UHGV-0196184_37	Structural annotation	PF05657	NA	NA
UHGV-0196184_38	UniRef90	UniRef90_A0A0A1GTA7	Gp9 protein	NA
UHGV-0196184_38	eggNOG-mapper	1423816.BACQ01000026_gene939	NA	NA
UHGV-0196184_38	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0196184_39	UniRef90	UniRef90_A0A2P0ZLD1	FkbH	NA
UHGV-0196184_39	eggNOG-mapper	565653.EGBG_01972	NA	NA
UHGV-0196184_39	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0196184_40	PHROG	phrog_749	NA	unknown function
UHGV-0196184_40	UniRef90	UniRef90_UPI00097E4236	phage gp6-like head-tail connector protein	NA
UHGV-0196184_40	eggNOG-mapper	999425.HMPREF9186_02036	NA	NA
UHGV-0196184_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0196184_41	UniRef90	UniRef90_A0A2P0ZLD6	Major capsid protein	NA
UHGV-0196184_41	eggNOG-mapper	1122147.AUEH01000027_gene2745	Phage capsid family	NA
UHGV-0196184_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0196184_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0196184_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0196184_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0196184_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0196184_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0196184_42	UniRef90	UniRef90_A0A1E3KRD5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0196184_42	eggNOG-mapper	1158610.UC3_02352	Clp protease	NA
UHGV-0196184_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0196184_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0196184_42	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0196184_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0196184_43	UniRef90	UniRef90_A0A151G8H6	Phage portal protein	NA
UHGV-0196184_43	eggNOG-mapper	1158614.I592_00620	Phage portal protein	NA
UHGV-0196184_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0196184_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0196184_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0196184_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0196184_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0196184_44	UniRef90	UniRef90_A0A151G8U6	Terminase	NA
UHGV-0196184_44	eggNOG-mapper	1423816.BACQ01000026_gene945	Phage Terminase	NA
UHGV-0196184_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0196184_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0196184_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0196184_44	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0196184_45	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0196184_45	UniRef90	UniRef90_A0A165P5Q7	NA	NA
UHGV-0196184_45	eggNOG-mapper	320836.Q4ZD78_9CAUD	Phage terminase, small subunit	NA
UHGV-0196184_45	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0196184_46	PHROG	phrog_26486	NA	unknown function
UHGV-0196184_46	UniRef90	UniRef90_A0A162F758	NA	NA
UHGV-0196184_47	PHROG	phrog_17806	NA	unknown function
UHGV-0196184_47	UniRef90	UniRef90_A0A2P0ZLD3	Diaminopimelate decarboxylase	NA
UHGV-0196184_48	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0196184_48	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196184_48	UniRef90	UniRef90_A0A8B4YQF6	HNHc domain-containing protein	NA
UHGV-0196184_48	eggNOG-mapper	1158610.UC3_02358	HNH nucleases	NA
UHGV-0196184_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0196184_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0196184_48	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0196184_49	PHROG	phrog_23649	NA	unknown function
UHGV-0196184_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0196184_52	UniRef90	UniRef90_A0A8G0ZHT5	NA	NA
UHGV-0196184_52	eggNOG-mapper	1423775.BAMN01000011_gene611	NA	NA
UHGV-0196184_52	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-0196184_53	PHROG	phrog_27493	NA	unknown function
UHGV-0196184_53	UniRef90	UniRef90_A0A809NMD8	NA	NA