UHGV-0196567

Genome information

Genome length 38,609 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0196567
vOTU ID	vOTU-013252
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00791970_a1_ct97517_vs1@linear@Myoviridae__sp._ctQBc1
BioSample	SAMN00791970
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.7
Jumbo phage	No

Genome content
Genome length	38,609 bps
GC content	57.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.16%
Average CDS length	589.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196567_1	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0196567_2	UniRef90	UniRef90_H1CEM5	SH3b domain-containing protein	NA
UHGV-0196567_2	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0196567_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0196567_2	Structural annotation	NF033743	NA	NA
UHGV-0196567_3	PHROG	phrog_13256	NA	unknown function
UHGV-0196567_3	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0196567_5	PHROG	phrog_937	hemolysin	other
UHGV-0196567_5	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0196567_6	eggNOG-mapper	1231336.L248_1708	NA	NA
UHGV-0196567_6	Structural annotation	PF14600	NA	NA
UHGV-0196567_8	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-0196567_8	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0196567_8	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0196567_8	COG	COG5492	NA	NA
UHGV-0196567_8	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0196567_9	PHROG	phrog_13589	NA	unknown function
UHGV-0196567_9	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0196567_10	PHROG	phrog_31538	NA	unknown function
UHGV-0196567_10	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0196567_11	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0196567_12	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0196567_13	PHROG	phrog_26795	NA	unknown function
UHGV-0196567_13	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0196567_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0196567_14	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0196567_14	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0196567_14	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0196567_14	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0196567_15	PHROG	phrog_13338	NA	unknown function
UHGV-0196567_15	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0196567_15	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0196567_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0196567_15	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0196567_16	Structural annotation	PF11836	NA	NA
UHGV-0196567_17	PHROG	phrog_88	major tail protein	tail
UHGV-0196567_17	UniRef90	UniRef90_UPI0001E2BD8E	phage tail protein	NA
UHGV-0196567_17	eggNOG-mapper	509191.AEDB02000020_gene3252	TIGRFAM phage major tail protein, phi13 family	NA
UHGV-0196567_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0196567_18	Structural annotation	TIGR01725	NA	NA
UHGV-0196567_19	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0196567_20	PHROG	phrog_19734	NA	unknown function
UHGV-0196567_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0196567_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0196567_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0196567_22	UniRef90	UniRef90_A0A2V2FJ37	Phage major capsid protein	NA
UHGV-0196567_22	eggNOG-mapper	398512.JQKC01000009_gene451	Phage capsid family	NA
UHGV-0196567_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0196567_22	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0196567_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0196567_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0196567_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0196567_23	KOfam	K06904	NA	NA
UHGV-0196567_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0196567_23	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0196567_23	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0196567_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0196567_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0196567_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0196567_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0196567_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0196567_24	UniRef90	UniRef90_A0A1D7MMF9	Phage portal protein	NA
UHGV-0196567_24	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0196567_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0196567_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0196567_24	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0196567_25	UniRef90	UniRef90_A0A7K3ZFF6	Cobalamin B12-binding domain-containing protein	NA
UHGV-0196567_25	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0196567_25	Structural annotation	PF02310, MF_01864, TIGR03960, COG1032	NA	NA
UHGV-0196567_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0196567_26	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0196567_26	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0196567_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0196567_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0196567_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0196567_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0196567_26	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0196567_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0196567_27	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0196567_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0196567_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0196567_34	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0196567_34	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0196567_34	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0196567_35	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0196567_35	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0196567_36	PHROG	phrog_4019	NA	unknown function
UHGV-0196567_37	UniRef90	UniRef90_UPI0015EA81F3	NA	NA
UHGV-0196567_37	Pfam	PF04448	NA	DUF551
UHGV-0196567_37	Structural annotation	NF041588	NA	NA
UHGV-0196567_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0196567_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0196567_40	Structural annotation	PF10013	NA	NA
UHGV-0196567_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0196567_41	PHROG	phrog_27290	NA	unknown function
UHGV-0196567_41	UniRef90	UniRef90_UPI00195A3B6D	ParB N-terminal domain-containing protein	NA
UHGV-0196567_41	eggNOG-mapper	742738.HMPREF9460_04281	ParB-like nuclease domain	NA
UHGV-0196567_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0196567_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0196567_41	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0196567_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0196567_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0196567_42	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0196567_42	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0196567_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-0196567_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0196567_42	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0196567_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0196567_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0196567_43	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0196567_43	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0196567_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0196567_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0196567_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0196567_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0196567_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0196567_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0196567_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0196567_44	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0196567_46	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0196567_46	UniRef90	UniRef90_A0A1Y4KU10	HTH cro/C1-type domain-containing protein	NA
UHGV-0196567_46	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0196567_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0196567_46	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0196567_46	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0196567_47	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0196567_48	UniRef90	UniRef90_UPI00189818F3	helix-turn-helix domain-containing protein	NA
UHGV-0196567_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196567_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0196567_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0196567_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0196567_49	UniRef90	UniRef90_UPI001142C2D8	helix-turn-helix domain-containing protein	NA
UHGV-0196567_49	eggNOG-mapper	1139219.I569_00209	PFAM helix-turn-helix domain protein	NA
UHGV-0196567_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0196567_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196567_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0196567_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0196567_50	eggNOG-mapper	537011.PREVCOP_05722	NA	NA
UHGV-0196567_51	eggNOG-mapper	500632.CLONEX_03087	NOG18738 non supervised orthologous group	NA
UHGV-0196567_51	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0196567_51	Structural annotation	PF02805	NA	NA
UHGV-0196567_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196567_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0196567_52	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0196567_53	KOfam	K14059	int; integrase	NA
UHGV-0196567_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0196567_53	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0196567_53	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0196567_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0196567_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0196567_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0196567_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0196567_54	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0196567_54	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0196567_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0196567_56	PHROG	phrog_16490	NA	unknown function
UHGV-0196567_56	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0196567_59	eggNOG-mapper	1160721.RBI_I00206	NA	NA