UHGV-0196909

Genome information

Genome length 28,306 bps

CDS count 45

Completeness 78.92% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0196909
vOTU ID	vOTU-030302
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00993240_a1_ct42501_vs1@linear@Siphoviridae__sp._ctnba1
BioSample	SAMN00993240
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.47
Jumbo phage	No

Genome content
Genome length	28,306 bps
GC content	43.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.44%
Average CDS length	599.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196909_6	PHROG	phrog_3657	NA	unknown function
UHGV-0196909_6	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0196909_6	eggNOG-mapper	1567011.A0A0A7RUE9_9VIRU	NA	NA
UHGV-0196909_7	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196909_7	UniRef90	UniRef90_A0A1C7I422	NA	NA
UHGV-0196909_7	eggNOG-mapper	411461.DORFOR_00019	NA	NA
UHGV-0196909_7	Pfam	PF12684	NA	DUF3799
UHGV-0196909_7	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0196909_7	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0196909_8	KOfam	K06915	herA; DNA double-strand break repair helicase HerA and related ATPase	NA
UHGV-0196909_8	PHROG	phrog_7035	NA	unknown function
UHGV-0196909_8	UniRef90	UniRef90_A0A1C7I487	NA	NA
UHGV-0196909_8	eggNOG-mapper	411461.DORFOR_00018	NA	NA
UHGV-0196909_8	PADLOC	HerA_00002	NA	GAO_19 \| GAO_20
UHGV-0196909_8	Pfam	PF01935	Helicase HerA, central domain	DUF87
UHGV-0196909_8	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0196909_8	Structural annotation	PF12846, PF09378, MF_01347, NF040937, COG0433	NA	NA
UHGV-0196909_9	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0196909_9	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0196909_10	PHROG	phrog_1029	NA	unknown function
UHGV-0196909_10	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0196909_10	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0196909_11	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0196909_11	eggNOG-mapper	33035.JPJF01000135_gene5079	NA	NA
UHGV-0196909_12	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0196909_12	UniRef90	UniRef90_A0A1C7IHF1	NA	NA
UHGV-0196909_12	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0196909_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0196909_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0196909_12	Structural annotation	PF14297	NA	NA
UHGV-0196909_13	PHROG	phrog_25488	NA	unknown function
UHGV-0196909_13	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0196909_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0196909_14	UniRef90	UniRef90_A0A4P6M5S7	LexA repressor	NA
UHGV-0196909_14	eggNOG-mapper	1403313.AXBR01000018_gene3549	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0196909_14	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0196909_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0196909_17	PHROG	phrog_6568	NA	unknown function
UHGV-0196909_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0196909_19	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0196909_19	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0196909_19	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0196909_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196909_20	UniRef90	UniRef90_UPI00164A3ACF	HNH endonuclease	NA
UHGV-0196909_20	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0196909_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0196909_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0196909_22	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0196909_22	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0196909_22	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0196909_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0196909_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0196909_23	UniRef90	UniRef90_A0A7G5N123	Terminase large subunit	NA
UHGV-0196909_23	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0196909_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0196909_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0196909_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0196909_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0196909_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0196909_24	UniRef90	UniRef90_A0A7G5N122	Phage portal protein	NA
UHGV-0196909_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0196909_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0196909_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0196909_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0196909_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0196909_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0196909_25	UniRef90	UniRef90_A0A7G5N121	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0196909_25	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0196909_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0196909_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0196909_25	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0196909_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0196909_26	UniRef90	UniRef90_A0A7G5N120	Phage major capsid protein	NA
UHGV-0196909_26	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0196909_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0196909_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0196909_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0196909_26	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0196909_27	PHROG	phrog_749	NA	unknown function
UHGV-0196909_28	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0196909_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0196909_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0196909_29	Structural annotation	PF05657	NA	NA
UHGV-0196909_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0196909_30	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0196909_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0196909_30	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0196909_31	PHROG	phrog_88	major tail protein	tail
UHGV-0196909_31	UniRef90	UniRef90_A0A7G5N115	Phage tail protein	NA
UHGV-0196909_31	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0196909_31	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0196909_31	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0196909_33	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0196909_33	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0196909_33	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-0196909_33	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-0196909_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0196909_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0196909_33	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0196909_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0196909_34	UniRef90	UniRef90_UPI00164B9B8B	phage tail family protein	NA
UHGV-0196909_34	eggNOG-mapper	33035.JPJF01000023_gene3231	phage tail	NA
UHGV-0196909_34	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0196909_34	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0196909_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0196909_34	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0196909_35	PHROG	phrog_13289	tail protein	tail
UHGV-0196909_35	UniRef90	UniRef90_A0A7G5N111	Prophage_tail domain-containing protein	NA
UHGV-0196909_35	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0196909_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0196909_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0196909_35	COG	COG4926	Phage-related protein	NA
UHGV-0196909_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0196909_36	KOfam	K21473	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	NA
UHGV-0196909_36	PHROG	phrog_11037	NA	unknown function
UHGV-0196909_36	UniRef90	UniRef90_A0A7G5N110	Peptidase M23	NA
UHGV-0196909_36	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0196909_36	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0196909_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0196909_36	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0196909_37	PHROG	phrog_19280	NA	unknown function
UHGV-0196909_37	eggNOG-mapper	33035.JPJF01000023_gene3228	NA	NA
UHGV-0196909_37	Structural annotation	PF10651, TIGR02781	NA	NA
UHGV-0196909_38	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0196909_38	PHROG	phrog_11157	NA	unknown function
UHGV-0196909_38	UniRef90	UniRef90_A0A7G5N108	Big_13 domain-containing protein	NA
UHGV-0196909_38	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0196909_38	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0196909_38	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0196909_38	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0196909_38	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0196909_39	PHROG	phrog_32322	NA	unknown function
UHGV-0196909_39	UniRef90	UniRef90_A0A7G5N107	Ig-like_bact domain-containing protein	NA
UHGV-0196909_39	eggNOG-mapper	33035.JPJF01000023_gene3226	NA	NA
UHGV-0196909_39	Pfam	PF13754	NA	Big_3_4
UHGV-0196909_39	Structural annotation	PF13754	NA	NA
UHGV-0196909_40	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0196909_40	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0196909_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0196909_42	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0196909_43	UniRef90	UniRef90_A0A7G5N3U9	Branched-chain amino acid ABC transporter permease	NA
UHGV-0196909_43	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0196909_44	PHROG	phrog_1129	holin	lysis
UHGV-0196909_44	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0196909_44	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0196909_44	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0196909_44	Structural annotation	PF16079	NA	NA
UHGV-0196909_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA