UHGV-0197044

Genome information

vOTU vOTU-020094

Genome length 40,857 bps

CDS count 76

Completeness 70.89% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0197044
vOTU ID	vOTU-020094
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN05414943_a1_ct36561_vs1@Siphoviridae__sp._ctShr1
BioSample	SAMN05414943
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.2
Jumbo phage	No

Genome content
Genome length	40,857 bps
GC content	47.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	82.49%
Average CDS length	446.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197044_2	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0197044_2	UniRef90	UniRef90_UPI001DACB905	ORF6C domain-containing protein	NA
UHGV-0197044_2	eggNOG-mapper	1121115.AXVN01000056_gene2483	BRO family, N-terminal domain	NA
UHGV-0197044_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0197044_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0197044_2	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0197044_3	PHROG	phrog_3896	NA	unknown function
UHGV-0197044_3	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0197044_4	Structural annotation	PF07878	NA	NA
UHGV-0197044_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0197044_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0197044_6	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0197044_6	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0197044_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-0197044_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0197044_6	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0197044_9	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0197044_9	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0197044_9	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0197044_9	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0197044_9	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0197044_9	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0197044_9	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0197044_10	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0197044_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197044_10	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0197044_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0197044_13	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0197044_13	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0197044_13	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0197044_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0197044_14	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0197044_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197044_14	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0197044_15	Structural annotation	PF10922	NA	NA
UHGV-0197044_17	Structural annotation	TIGR03826	NA	NA
UHGV-0197044_19	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0197044_19	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0197044_21	Structural annotation	PF14143	NA	NA
UHGV-0197044_22	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0197044_22	eggNOG-mapper	1123399.AQVE01000002_gene2370	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0197044_22	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0197044_22	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0197044_22	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0197044_24	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0197044_24	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0197044_24	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0197044_24	Pfam	PF13479	AAA domain	AAA_24
UHGV-0197044_24	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0197044_25	PHROG	phrog_18107	NA	unknown function
UHGV-0197044_25	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0197044_25	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0197044_25	Structural annotation	PF05037	NA	NA
UHGV-0197044_26	PHROG	phrog_28936	NA	unknown function
UHGV-0197044_26	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0197044_26	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0197044_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0197044_27	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0197044_27	UniRef90	UniRef90_UPI001AD807B6	DNA cytosine methyltransferase	NA
UHGV-0197044_27	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0197044_27	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0197044_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0197044_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0197044_28	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0197044_28	UniRef90	UniRef90_A0A2J4JSJ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0197044_28	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0197044_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0197044_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0197044_31	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0197044_31	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0197044_31	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0197044_31	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0197044_32	PHROG	phrog_2715	NA	unknown function
UHGV-0197044_32	eggNOG-mapper	718252.FP2_16370	NA	NA
UHGV-0197044_32	Structural annotation	PF18406	NA	NA
UHGV-0197044_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0197044_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0197044_36	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0197044_36	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0197044_36	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0197044_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0197044_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0197044_36	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0197044_37	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0197044_40	PHROG	phrog_924	NA	unknown function
UHGV-0197044_40	UniRef90	UniRef90_UPI00189DCC57	NA	NA
UHGV-0197044_40	Pfam	PF04448	NA	DUF551
UHGV-0197044_40	Structural annotation	NF041588	NA	NA
UHGV-0197044_41	Structural annotation	PF16677	NA	NA
UHGV-0197044_42	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0197044_42	eggNOG-mapper	596327.PORUE0001_0850	restriction	NA
UHGV-0197044_42	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0197044_42	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0197044_49	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0197044_49	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0197044_49	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0197044_50	Pfam	PF04448	NA	DUF551
UHGV-0197044_52	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0197044_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0197044_52	Structural annotation	PF14354	NA	NA
UHGV-0197044_53	PHROG	phrog_15768	NA	unknown function
UHGV-0197044_53	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0197044_53	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0197044_53	Pfam	PF19808	NA	DUF6291
UHGV-0197044_53	Structural annotation	PF19808	NA	NA
UHGV-0197044_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0197044_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0197044_54	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0197044_54	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0197044_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0197044_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-0197044_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0197044_55	PHROG	phrog_419	NA	unknown function
UHGV-0197044_55	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0197044_55	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0197044_55	Structural annotation	PF14083	NA	NA
UHGV-0197044_56	PHROG	phrog_1709	NA	unknown function
UHGV-0197044_56	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-0197044_58	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197044_58	eggNOG-mapper	1519439.JPJG01000044_gene958	NA	NA
UHGV-0197044_61	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0197044_62	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0197044_62	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0197044_62	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0197044_62	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0197044_62	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0197044_62	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0197044_62	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0197044_63	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0197044_65	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0197044_65	PHROG	phrog_95	integrase	integration and excision
UHGV-0197044_65	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0197044_65	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0197044_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0197044_65	Pfam	PF07508	Recombinase	Recombinase
UHGV-0197044_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0197044_65	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0197044_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0197044_66	Structural annotation	PF02796, PF15653	NA	NA
UHGV-0197044_68	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0197044_68	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0197044_68	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0197044_68	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0197044_68	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0197044_68	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0197044_68	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0197044_69	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0197044_69	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0197044_69	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0197044_69	COG	COG5410	NA	NA
UHGV-0197044_69	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0197044_71	PHROG	phrog_64	portal protein	head and packaging
UHGV-0197044_71	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0197044_71	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0197044_71	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0197044_71	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0197044_72	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0197044_72	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0197044_72	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0197044_75	PHROG	phrog_29	major head protein	head and packaging
UHGV-0197044_75	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0197044_75	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0197044_75	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0197044_75	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA