UHGV-0197136

Genome information

Genome length 32,075 bps

CDS count 42

Completeness 99.27% (high-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-0197136
vOTU ID	vOTU-011422
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00792073_a1_ct90822_vs1@linear@Myoviridae__sp._ct9mi1
BioSample	SAMN00792073
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.4
Jumbo phage	No

Genome content
Genome length	32,075 bps
GC content	49.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.15%
Average CDS length	697.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197136_1	KOfam	K09952	csn1, cas9; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]	NA
UHGV-0197136_1	eggNOG-mapper	665956.HMPREF1032_03962	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer	NA
UHGV-0197136_1	PADLOC	cas9_maka_4_II	Cas9	CRISPR-CAS
UHGV-0197136_1	COG	COG3513	CRISPR-Cas system type-II protein Cas9	NA
UHGV-0197136_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0197136_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0197136_2	UniRef90	UniRef90_A0A1M6M277	Site-specific DNA recombinase	NA
UHGV-0197136_2	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0197136_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0197136_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0197136_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0197136_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0197136_2	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0197136_4	UniRef90	UniRef90_A0A7D8S0W4	XRE family transcriptional regulator	NA
UHGV-0197136_4	eggNOG-mapper	1123263.AUKY01000107_gene746	Peptidase S24-like	NA
UHGV-0197136_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197136_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0197136_8	eggNOG-mapper	517418.Ctha_0322	NA	NA
UHGV-0197136_8	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0197136_9	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0197136_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0197136_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0197136_10	UniRef90	UniRef90_G9RV39	PAPS_reduct domain-containing protein	NA
UHGV-0197136_10	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0197136_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0197136_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0197136_10	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0197136_12	PHROG	phrog_24368	NA	unknown function
UHGV-0197136_12	eggNOG-mapper	1235798.C817_02588	NA	NA
UHGV-0197136_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0197136_15	eggNOG-mapper	97139.C824_00747	NA	NA
UHGV-0197136_15	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0197136_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0197136_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0197136_17	UniRef90	UniRef90_A0A810Q3U8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0197136_17	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0197136_17	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0197136_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0197136_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0197136_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0197136_18	PHROG	phrog_37023	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197136_18	UniRef90	UniRef90_A0A7G9WGA7	NA	NA
UHGV-0197136_18	eggNOG-mapper	936573.HMPREF1147_1309	NA	NA
UHGV-0197136_18	Pfam	PF06356	NA	DUF1064
UHGV-0197136_19	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0197136_19	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0197136_19	UniRef90	UniRef90_R7ZCE3	Soj protein	NA
UHGV-0197136_19	eggNOG-mapper	1285586.H131_14978	Cellulose biosynthesis protein BcsQ	NA
UHGV-0197136_19	Pfam	PF13614	AAA domain	AAA_31
UHGV-0197136_19	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0197136_19	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0197136_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0197136_20	PHROG	phrog_15982	NA	unknown function
UHGV-0197136_20	UniRef90	UniRef90_A0A7G8TDZ4	ParB/RepB/Spo0J family partition protein	NA
UHGV-0197136_20	eggNOG-mapper	1285586.H131_14973	NA	NA
UHGV-0197136_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0197136_20	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0197136_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0197136_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0197136_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0197136_21	UniRef90	UniRef90_A0A6I3QR10	HicB family protein	NA
UHGV-0197136_21	eggNOG-mapper	1195236.CTER_2094	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0197136_21	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0197136_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0197136_21	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0197136_22	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0197136_22	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0197136_22	UniRef90	UniRef90_A0A6I3Q9T7	Addiction module toxin, HicA family	NA
UHGV-0197136_22	eggNOG-mapper	913865.DOT_1066	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0197136_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0197136_22	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0197136_24	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0197136_24	PHROG	phrog_3193	NA	unknown function
UHGV-0197136_24	UniRef90	UniRef90_UPI0019D660EA	ASCH domain-containing protein	NA
UHGV-0197136_24	eggNOG-mapper	1123288.SOV_4c02530	ASCH domain	NA
UHGV-0197136_24	Pfam	PF04266	ASCH domain	ASCH
UHGV-0197136_24	Structural annotation	COG4933	NA	NA
UHGV-0197136_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0197136_26	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0197136_26	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0197136_26	Structural annotation	PF02996	NA	NA
UHGV-0197136_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0197136_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197136_27	UniRef90	UniRef90_A0A2V2GTI8	HNH endonuclease	NA
UHGV-0197136_27	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0197136_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0197136_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0197136_28	PHROG	phrog_1066	NA	unknown function
UHGV-0197136_28	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0197136_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0197136_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0197136_29	UniRef90	UniRef90_UPI00189BE34B	terminase large subunit	NA
UHGV-0197136_29	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0197136_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0197136_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0197136_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0197136_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0197136_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0197136_30	UniRef90	UniRef90_UPI00189AE45D	phage portal protein	NA
UHGV-0197136_30	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-0197136_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0197136_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0197136_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0197136_31	KOfam	K06904	NA	NA
UHGV-0197136_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0197136_31	UniRef90	UniRef90_UPI00189C5536	HK97 family phage prohead protease	NA
UHGV-0197136_31	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-0197136_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0197136_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0197136_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0197136_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0197136_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0197136_32	UniRef90	UniRef90_UPI001899FA80	phage major capsid protein	NA
UHGV-0197136_32	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0197136_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0197136_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0197136_32	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0197136_33	PHROG	phrog_5223	neck protein	connector
UHGV-0197136_33	UniRef90	UniRef90_UPI001A9AF385	DNA-packaging protein	NA
UHGV-0197136_33	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0197136_33	Structural annotation	TIGR01560	NA	NA
UHGV-0197136_34	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0197136_34	UniRef90	UniRef90_UPI00189900AB	phage head closure protein	NA
UHGV-0197136_34	eggNOG-mapper	588581.Cpap_1270	NA	NA
UHGV-0197136_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0197136_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0197136_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0197136_35	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0197136_35	Structural annotation	PF05657	NA	NA
UHGV-0197136_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0197136_36	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0197136_36	eggNOG-mapper	349161.Dred_2601	Phage protein, HK97 gp10 family	NA
UHGV-0197136_36	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0197136_36	Structural annotation	TIGR01725	NA	NA
UHGV-0197136_37	PHROG	phrog_88	major tail protein	tail
UHGV-0197136_37	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0197136_37	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0197136_37	COG	COG5492	NA	NA
UHGV-0197136_37	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0197136_38	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0197136_39	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0197136_39	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0197136_39	UniRef90	UniRef90_A0A2V2GS89	Phage tail tape measure protein	NA
UHGV-0197136_39	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0197136_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0197136_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0197136_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0197136_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0197136_40	PHROG	phrog_36410	NA	unknown function
UHGV-0197136_40	UniRef90	UniRef90_A0A7C7D9C2	Phage tail family protein	NA
UHGV-0197136_40	eggNOG-mapper	1120746.CCNL01000017_gene2787	NA	NA
UHGV-0197136_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0197136_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0197136_40	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0197136_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0197136_41	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0197136_41	eggNOG-mapper	394503.Ccel_0826	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0197136_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0197136_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0197136_42	PHROG	phrog_1220	head protein	head and packaging
UHGV-0197136_42	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0197136_42	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0197136_42	Structural annotation	PF18463, PF20747	NA	NA