UHGV-0197269

Genome information

Genome length 32,269 bps

CDS count 41

Completeness 85.86% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0197269
vOTU ID	vOTU-030319
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00993240_a1_ct9597_vs1@linear@Siphoviridae__sp._ctoPy1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.42
Jumbo phage	No

Genome content
Genome length	32,269 bps
GC content	45.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	95.02%
Average CDS length	756.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197269_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0197269_1	PHROG	phrog_435	endolysin	lysis
UHGV-0197269_1	UniRef90	UniRef90_A0A6L5Y0L2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197269_1	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0197269_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0197269_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197269_2	PHROG	phrog_199	holin	lysis
UHGV-0197269_2	UniRef90	UniRef90_UPI001D04A6A6	phage holin family protein	NA
UHGV-0197269_2	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0197269_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0197269_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0197269_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0197269_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0197269_3	PHROG	phrog_2310	NA	unknown function
UHGV-0197269_3	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-0197269_4	PHROG	phrog_16573	NA	unknown function
UHGV-0197269_4	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0197269_5	eggNOG-mapper	1463856.JOHY01000008_gene806	Parallel beta-helix repeats	NA
UHGV-0197269_5	COG	COG5434	Polygalacturonase	NA
UHGV-0197269_6	PHROG	phrog_18444	NA	unknown function
UHGV-0197269_7	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0197269_7	PHROG	phrog_13289	tail protein	tail
UHGV-0197269_7	UniRef90	UniRef90_UPI000CDA202F	phage tail protein	NA
UHGV-0197269_7	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0197269_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0197269_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0197269_7	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0197269_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0197269_8	UniRef90	UniRef90_UPI00138FB3D0	phage tail protein	NA
UHGV-0197269_8	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0197269_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0197269_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0197269_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0197269_9	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0197269_9	PHROG	phrog_5218	NA	unknown function
UHGV-0197269_9	UniRef90	UniRef90_UPI000CDB7328	phage tail tape measure protein	NA
UHGV-0197269_9	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0197269_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0197269_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0197269_9	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0197269_11	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0197269_11	Structural annotation	PF11836	NA	NA
UHGV-0197269_12	PHROG	phrog_88	major tail protein	tail
UHGV-0197269_12	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-0197269_12	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0197269_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0197269_12	COG	COG5492	NA	NA
UHGV-0197269_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0197269_13	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0197269_13	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0197269_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0197269_14	UniRef90	UniRef90_UPI0013905FA6	HK97 gp10 family phage protein	NA
UHGV-0197269_14	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0197269_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0197269_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0197269_14	Structural annotation	TIGR01725	NA	NA
UHGV-0197269_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0197269_15	UniRef90	UniRef90_A0A2V2GTA0	Phage head-tail adapter protein	NA
UHGV-0197269_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0197269_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0197269_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0197269_16	PHROG	phrog_5223	neck protein	connector
UHGV-0197269_16	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0197269_16	eggNOG-mapper	1094508.Tsac_2423	NA	NA
UHGV-0197269_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0197269_17	UniRef90	UniRef90_UPI00148B248C	phage major capsid protein	NA
UHGV-0197269_17	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0197269_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0197269_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0197269_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0197269_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0197269_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0197269_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0197269_18	UniRef90	UniRef90_UPI00148AFF63	Clp protease ClpP	NA
UHGV-0197269_18	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0197269_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0197269_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0197269_18	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0197269_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0197269_19	UniRef90	UniRef90_UPI00148B140C	phage portal protein	NA
UHGV-0197269_19	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0197269_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0197269_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0197269_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0197269_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0197269_22	UniRef90	UniRef90_UPI00148AEB9A	terminase large subunit	NA
UHGV-0197269_22	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0197269_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0197269_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0197269_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0197269_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0197269_23	PHROG	phrog_1066	NA	unknown function
UHGV-0197269_23	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0197269_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0197269_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197269_24	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0197269_24	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0197269_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0197269_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0197269_26	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0197269_27	eggNOG-mapper	411468.CLOSCI_00568	NA	NA
UHGV-0197269_28	PHROG	phrog_7566	NA	unknown function
UHGV-0197269_28	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0197269_31	eggNOG-mapper	1235798.C817_01884	NA	NA
UHGV-0197269_32	PHROG	phrog_15077	NA	unknown function
UHGV-0197269_32	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0197269_32	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0197269_32	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0197269_33	PHROG	phrog_8470	NA	unknown function
UHGV-0197269_33	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-0197269_33	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0197269_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0197269_33	Structural annotation	PF14284	NA	NA
UHGV-0197269_34	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0197269_35	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0197269_35	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0197269_35	UniRef90	UniRef90_A0A4Q7PJQ5	RNase H superfamily protein	NA
UHGV-0197269_35	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0197269_35	Pfam	PF00075	RNase H	RNase_H
UHGV-0197269_35	COG	COG0328	Ribonuclease HI	NA
UHGV-0197269_35	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0197269_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0197269_36	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0197269_36	Structural annotation	PF21578	NA	NA
UHGV-0197269_38	PHROG	phrog_34638	NA	unknown function
UHGV-0197269_38	Structural annotation	COG1965	NA	NA
UHGV-0197269_40	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0197269_40	PHROG	phrog_923	NA	unknown function
UHGV-0197269_40	UniRef90	UniRef90_UPI001A9A2CBD	pentapeptide repeat-containing protein	NA
UHGV-0197269_40	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0197269_40	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0197269_40	COG	COG1357	NA	NA