UHGV-0197292

Genome information

Genome length 34,033 bps

CDS count 66

Completeness 79.97% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0197292
vOTU ID	vOTU-028105
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN06164978_a1_ct74090_vs1@linear@Siphoviridae__sp._ct5521
BioSample	SAMN06164978
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.27
Jumbo phage	No

Genome content
Genome length	34,033 bps
GC content	53.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	90.41%
Average CDS length	470.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197292_1	PHROG	phrog_27197	NA	unknown function
UHGV-0197292_1	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0197292_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0197292_2	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0197292_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0197292_2	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0197292_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0197292_4	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0197292_4	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0197292_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0197292_4	Structural annotation	PF05565	NA	NA
UHGV-0197292_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197292_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0197292_5	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0197292_5	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0197292_6	PHROG	phrog_1389	NA	unknown function
UHGV-0197292_6	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0197292_6	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0197292_8	PHROG	phrog_7566	NA	unknown function
UHGV-0197292_8	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0197292_8	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0197292_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0197292_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0197292_9	UniRef90	UniRef90_G4L1H2	Single-stranded DNA-binding protein	NA
UHGV-0197292_9	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0197292_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0197292_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0197292_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0197292_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0197292_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0197292_10	PHROG	phrog_15768	NA	unknown function
UHGV-0197292_10	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0197292_10	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0197292_10	Pfam	PF19808	NA	DUF6291
UHGV-0197292_10	Structural annotation	PF19808	NA	NA
UHGV-0197292_12	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0197292_12	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0197292_12	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0197292_12	Pfam	PF06356	NA	DUF1064
UHGV-0197292_12	Structural annotation	PF06356	NA	NA
UHGV-0197292_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0197292_13	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0197292_13	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0197292_13	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0197292_13	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0197292_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0197292_13	COG	COG0863	DNA modification methylase	NA
UHGV-0197292_13	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0197292_15	eggNOG-mapper	1232443.BAIA02000103_gene2903	NA	NA
UHGV-0197292_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0197292_16	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0197292_16	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0197292_16	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0197292_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0197292_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0197292_18	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0197292_19	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0197292_19	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0197292_19	UniRef90	UniRef90_A0A3D1PJR7	DNA methyltransferase	NA
UHGV-0197292_19	eggNOG-mapper	400682.PAC_15710341	primary miRNA methylation	NA
UHGV-0197292_19	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0197292_19	Pfam	PF05063	MT-A70	MT-A70
UHGV-0197292_19	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0197292_19	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0197292_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0197292_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0197292_26	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0197292_26	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0197292_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197292_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0197292_26	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0197292_27	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0197292_27	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0197292_27	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0197292_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0197292_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0197292_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0197292_28	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0197292_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0197292_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0197292_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0197292_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0197292_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0197292_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0197292_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0197292_29	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0197292_29	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0197292_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0197292_29	Structural annotation	PF05133, MF_04120, TIGR01542	NA	NA
UHGV-0197292_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0197292_30	UniRef90	UniRef90_K1TR80	Prophage LambdaCh01, tail tape measure protein (Fragment)	NA
UHGV-0197292_30	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0197292_30	Pfam	PF05017	TMP repeat	TMP
UHGV-0197292_30	COG	COG1511	NA	NA
UHGV-0197292_31	PHROG	phrog_1194	NA	unknown function
UHGV-0197292_31	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0197292_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0197292_32	PHROG	phrog_13879	NA	unknown function
UHGV-0197292_32	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0197292_32	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0197292_33	PHROG	phrog_18725	NA	unknown function
UHGV-0197292_33	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0197292_33	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0197292_35	KOfam	K20285	RABEPK; Rab9 effector protein with kelch motifs	NA
UHGV-0197292_35	UniRef90	UniRef90_A0A8D9PDI7	mRNA splicing protein	NA
UHGV-0197292_35	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0197292_35	Structural annotation	PF16472, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0197292_37	PHROG	phrog_37900	NA	unknown function
UHGV-0197292_37	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0197292_37	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0197292_37	Pfam	PF19789	NA	DUF6273
UHGV-0197292_37	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0197292_37	Structural annotation	PF19789	NA	NA
UHGV-0197292_38	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0197292_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0197292_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0197292_39	UniRef90	UniRef90_H1CEN0	Reverse transcriptase domain-containing protein	NA
UHGV-0197292_39	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0197292_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0197292_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0197292_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0197292_39	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0197292_42	PHROG	phrog_2310	NA	unknown function
UHGV-0197292_42	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0197292_44	PHROG	phrog_4105	NA	unknown function
UHGV-0197292_44	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0197292_44	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0197292_45	PHROG	phrog_881	holin	lysis
UHGV-0197292_45	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0197292_45	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0197292_45	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0197292_45	Structural annotation	PF16938	NA	NA
UHGV-0197292_46	PHROG	phrog_9589	endolysin	lysis
UHGV-0197292_46	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0197292_46	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0197292_46	Pfam	PF05257	CHAP domain	CHAP
UHGV-0197292_46	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0197292_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0197292_46	Structural annotation	PF01520, PF01471, TIGR02883, COG0860	NA	NA
UHGV-0197292_48	PHROG	phrog_3754	NA	unknown function
UHGV-0197292_48	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0197292_49	PHROG	phrog_21718	NA	unknown function
UHGV-0197292_49	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0197292_50	PHROG	phrog_22984	NA	unknown function
UHGV-0197292_51	PHROG	phrog_16490	NA	unknown function
UHGV-0197292_51	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0197292_52	PHROG	phrog_20016	NA	unknown function
UHGV-0197292_52	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0197292_52	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0197292_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0197292_53	PHROG	phrog_28802	NA	unknown function
UHGV-0197292_53	Structural annotation	PF12510	NA	NA
UHGV-0197292_54	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0197292_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0197292_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0197292_55	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0197292_55	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0197292_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0197292_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0197292_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0197292_55	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0197292_56	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0197292_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197292_56	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0197292_60	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0197292_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0197292_61	eggNOG-mapper	476272.RUMHYD_01731	NA	NA
UHGV-0197292_61	Structural annotation	PF13429, TIGR02552, COG0457	NA	NA
UHGV-0197292_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0197292_62	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0197292_62	eggNOG-mapper	405948.SACE_5483	domain, Protein	NA
UHGV-0197292_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197292_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0197292_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0197292_64	PHROG	phrog_22529	NA	unknown function
UHGV-0197292_64	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0197292_64	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0197292_64	Pfam	PF06725	3D domain	3D
UHGV-0197292_64	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0197292_64	Structural annotation	COG3584	NA	NA
UHGV-0197292_66	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0197292_66	PHROG	phrog_4433	NA	unknown function
UHGV-0197292_66	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0197292_66	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0197292_66	COG	COG5164	Transcription elongation factor SPT5	NA