UHGV-0197750

Genome information

Genome length 23,843 bps

CDS count 45

Completeness 56.31% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0197750
vOTU ID	vOTU-022501
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN09781725_a1_ct88867_vs1@Siphoviridae__sp._ctU3o1
BioSample	SAMN09781725
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.79
Jumbo phage	No

Genome content
Genome length	23,843 bps
GC content	53.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.01%
Average CDS length	480.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197750_1	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0197750_1	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0197750_2	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0197750_2	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0197750_2	Pfam	PF06378	NA	DUF1071
UHGV-0197750_2	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0197750_4	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0197750_4	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0197750_4	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0197750_6	PHROG	phrog_22529	NA	unknown function
UHGV-0197750_6	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0197750_6	eggNOG-mapper	742733.HMPREF9469_00853	3D domain	NA
UHGV-0197750_6	Pfam	PF06725	3D domain	3D
UHGV-0197750_6	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0197750_6	Structural annotation	COG3584	NA	NA
UHGV-0197750_9	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0197750_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197750_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0197750_10	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0197750_10	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0197750_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197750_10	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0197750_14	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0197750_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197750_14	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0197750_15	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0197750_15	PHROG	phrog_95	integrase	integration and excision
UHGV-0197750_15	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-0197750_15	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0197750_15	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0197750_15	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0197750_15	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0197750_15	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0197750_16	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0197750_17	PHROG	phrog_28802	NA	unknown function
UHGV-0197750_17	Structural annotation	PF12510	NA	NA
UHGV-0197750_18	PHROG	phrog_20016	NA	unknown function
UHGV-0197750_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0197750_18	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0197750_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0197750_19	PHROG	phrog_16490	NA	unknown function
UHGV-0197750_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0197750_20	PHROG	phrog_22984	NA	unknown function
UHGV-0197750_21	PHROG	phrog_21718	NA	unknown function
UHGV-0197750_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0197750_22	PHROG	phrog_3754	NA	unknown function
UHGV-0197750_22	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0197750_24	PHROG	phrog_435	endolysin	lysis
UHGV-0197750_24	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0197750_24	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197750_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0197750_24	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0197750_25	PHROG	phrog_1129	holin	lysis
UHGV-0197750_25	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0197750_25	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0197750_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0197750_25	Structural annotation	PF06946	NA	NA
UHGV-0197750_26	PHROG	phrog_4105	NA	unknown function
UHGV-0197750_26	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0197750_26	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0197750_28	PHROG	phrog_2310	NA	unknown function
UHGV-0197750_28	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0197750_31	PHROG	phrog_2295	NA	unknown function
UHGV-0197750_31	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0197750_31	Structural annotation	PF21722	NA	NA
UHGV-0197750_33	PHROG	phrog_18725	NA	unknown function
UHGV-0197750_33	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0197750_33	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0197750_34	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0197750_34	PHROG	phrog_11157	NA	unknown function
UHGV-0197750_34	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0197750_34	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0197750_34	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0197750_34	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0197750_34	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0197750_34	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0197750_36	PHROG	phrog_13879	NA	unknown function
UHGV-0197750_36	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0197750_36	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0197750_37	PHROG	phrog_1194	NA	unknown function
UHGV-0197750_37	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0197750_37	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0197750_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0197750_38	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0197750_38	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0197750_38	COG	COG1511	NA	NA
UHGV-0197750_38	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0197750_39	PHROG	phrog_806	NA	unknown function
UHGV-0197750_39	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0197750_39	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0197750_39	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0197750_39	Pfam	PF11611	NA	DUF4352
UHGV-0197750_39	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0197750_40	PHROG	phrog_706	NA	unknown function
UHGV-0197750_40	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0197750_40	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0197750_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0197750_40	Structural annotation	PF06854	NA	NA
UHGV-0197750_41	PHROG	phrog_11299	NA	unknown function
UHGV-0197750_41	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0197750_41	Structural annotation	PF10666	NA	NA
UHGV-0197750_42	PHROG	phrog_3099	NA	unknown function
UHGV-0197750_42	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0197750_42	Structural annotation	TIGR02126	NA	NA
UHGV-0197750_43	PHROG	phrog_3266	tail completion	connector
UHGV-0197750_43	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0197750_43	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0197750_43	Structural annotation	PF12691	NA	NA
UHGV-0197750_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0197750_44	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0197750_44	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0197750_44	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0197750_44	Structural annotation	PF11114	NA	NA
UHGV-0197750_45	eggNOG-mapper	642492.Clole_0823	NA	NA