UHGV-0198038

Genome information

Genome length 23,950 bps

CDS count 33

Completeness 66.52% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0198038
vOTU ID	vOTU-030357
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00792102_a1_ct22038_vs1@linear@Siphoviridae__sp._cteDO1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.73
Jumbo phage	No

Genome content
Genome length	23,950 bps
GC content	48.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.29%
Average CDS length	672.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198038_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0198038_2	UniRef90	UniRef90_UPI001645E2CE	HNH endonuclease	NA
UHGV-0198038_2	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0198038_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0198038_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0198038_2	Structural annotation	NF008448	NA	NA
UHGV-0198038_3	PHROG	phrog_1066	NA	unknown function
UHGV-0198038_3	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0198038_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0198038_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0198038_4	UniRef90	UniRef90_UPI00164586AB	terminase large subunit	NA
UHGV-0198038_4	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-0198038_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0198038_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0198038_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0198038_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0198038_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0198038_6	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-0198038_6	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0198038_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0198038_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0198038_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0198038_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0198038_7	KOfam	K06904	NA	NA
UHGV-0198038_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0198038_7	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-0198038_7	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0198038_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0198038_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0198038_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0198038_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0198038_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0198038_8	UniRef90	UniRef90_UPI001648ED55	phage major capsid protein	NA
UHGV-0198038_8	eggNOG-mapper	1232428.CAVO010000003_gene1009	phage major capsid protein, HK97 family	NA
UHGV-0198038_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0198038_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0198038_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0198038_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0198038_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0198038_9	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-0198038_9	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-0198038_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0198038_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0198038_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0198038_10	PHROG	phrog_25	head closure Hc1	connector
UHGV-0198038_10	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-0198038_10	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0198038_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0198038_10	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0198038_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0198038_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0198038_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0198038_11	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-0198038_11	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0198038_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0198038_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0198038_12	PHROG	phrog_525	NA	unknown function
UHGV-0198038_12	Pfam	PF20765	NA	DUF6838
UHGV-0198038_13	PHROG	phrog_1480	tail sheath	tail
UHGV-0198038_13	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0198038_13	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0198038_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0198038_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0198038_13	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0198038_14	PHROG	phrog_365	tail protein	tail
UHGV-0198038_14	UniRef90	UniRef90_UPI001645E4E9	phage tail tube protein	NA
UHGV-0198038_14	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0198038_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0198038_14	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0198038_15	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0198038_15	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-0198038_15	eggNOG-mapper	332101.JIBU02000023_gene4806	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0198038_15	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0198038_15	Structural annotation	PF08890	NA	NA
UHGV-0198038_16	PHROG	phrog_2722	NA	unknown function
UHGV-0198038_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0198038_17	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-0198038_17	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0198038_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0198038_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0198038_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0198038_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0198038_18	PHROG	phrog_5184	NA	unknown function
UHGV-0198038_18	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0198038_18	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0198038_18	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0198038_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0198038_18	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0198038_19	PHROG	phrog_400	tail protein	tail
UHGV-0198038_19	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0198038_19	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0198038_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0198038_19	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0198038_20	PHROG	phrog_579	NA	unknown function
UHGV-0198038_20	UniRef90	UniRef90_UPI0016483798	NA	NA
UHGV-0198038_20	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0198038_20	Pfam	PF10844	NA	DUF2577
UHGV-0198038_20	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0198038_21	PHROG	phrog_120	baseplate protein	tail
UHGV-0198038_21	UniRef90	UniRef90_UPI001646EAB8	NA	NA
UHGV-0198038_21	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0198038_21	Pfam	PF10934	NA	DUF2634
UHGV-0198038_21	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0198038_21	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0198038_22	PHROG	phrog_6	baseplate protein	tail
UHGV-0198038_22	UniRef90	UniRef90_UPI0016450683	baseplate J/gp47 family protein	NA
UHGV-0198038_22	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0198038_22	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0198038_22	COG	COG3299	NA	NA
UHGV-0198038_22	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0198038_23	PHROG	phrog_521	tail protein	tail
UHGV-0198038_23	UniRef90	UniRef90_UPI0016446E40	NA	NA
UHGV-0198038_23	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0198038_23	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0198038_23	COG	COG3778	NA	NA
UHGV-0198038_23	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0198038_24	PHROG	phrog_5717	tail protein	tail
UHGV-0198038_24	UniRef90	UniRef90_UPI000E2D5162	phage tail protein	NA
UHGV-0198038_24	eggNOG-mapper	573.JG24_21900	tail collar domain protein	NA
UHGV-0198038_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0198038_24	Structural annotation	PF12571	NA	NA
UHGV-0198038_25	PHROG	phrog_11262	tail protein	tail
UHGV-0198038_25	UniRef90	UniRef90_UPI001647F323	phage tail protein	NA
UHGV-0198038_25	eggNOG-mapper	644968.DFW101_3036	NA	NA
UHGV-0198038_25	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0198038_26	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0198038_26	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0198038_26	UniRef90	UniRef90_UPI001644E057	reverse transcriptase/maturase family protein	NA
UHGV-0198038_26	eggNOG-mapper	1031288.AXAA01000043_gene1778	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0198038_26	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0198038_26	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0198038_26	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0198038_26	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0198038_27	eggNOG-mapper	1492737.FEM08_13450	NA	NA
UHGV-0198038_28	eggNOG-mapper	634504.Bgr_08520	NA	NA
UHGV-0198038_29	PHROG	phrog_4105	NA	unknown function
UHGV-0198038_29	eggNOG-mapper	610130.Closa_0762	NA	NA
UHGV-0198038_30	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0198038_30	PHROG	phrog_435	endolysin	lysis
UHGV-0198038_30	UniRef90	UniRef90_UPI000409D653	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0198038_30	eggNOG-mapper	1408423.JHYA01000001_gene891	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0198038_30	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0198038_30	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0198038_30	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0198038_31	PHROG	phrog_18996	NA	unknown function
UHGV-0198038_31	eggNOG-mapper	1273103.NM10_01746	NA	NA
UHGV-0198038_32	PHROG	phrog_6332	NA	unknown function
UHGV-0198038_32	UniRef90	UniRef90_A0A3D5P8I3	Cys_rich_CPCC domain-containing protein	NA
UHGV-0198038_32	eggNOG-mapper	575593.HMPREF0491_02249	Cysteine-rich CPCC	NA
UHGV-0198038_32	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0198038_32	Structural annotation	PF14206	NA	NA